miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15798 5' -53.8 NC_004065.1 + 105000 0.66 0.98981
Target:  5'- aCGGgcggCUGUGUGAcgagccgcugcuGGCG-UACgugaGCGCGCu -3'
miRNA:   3'- -GCUa---GACGCACU------------CCGCuAUG----UGCGCG- -5'
15798 5' -53.8 NC_004065.1 + 6438 0.66 0.98981
Target:  5'- gGGUCUaucgaGUGagagaaUGAGGgGAUAUACGgGCg -3'
miRNA:   3'- gCUAGA-----CGC------ACUCCgCUAUGUGCgCG- -5'
15798 5' -53.8 NC_004065.1 + 128581 0.66 0.98981
Target:  5'- gCGAcgUCgGCGgcgaAGGCGcAUccGCACGCGCc -3'
miRNA:   3'- -GCU--AGaCGCac--UCCGC-UA--UGUGCGCG- -5'
15798 5' -53.8 NC_004065.1 + 209382 0.66 0.98981
Target:  5'- cCGAggcCUGCGacgGAgacGGCGAUACGguCGCGg -3'
miRNA:   3'- -GCUa--GACGCa--CU---CCGCUAUGU--GCGCg -5'
15798 5' -53.8 NC_004065.1 + 212205 0.66 0.98981
Target:  5'- aGAcCUGUGgaaaacGGGGUGAU-CACGCGg -3'
miRNA:   3'- gCUaGACGCa-----CUCCGCUAuGUGCGCg -5'
15798 5' -53.8 NC_004065.1 + 86908 0.66 0.98981
Target:  5'- cCGGUCUcGCccucGGCGGcGCGCGCGUc -3'
miRNA:   3'- -GCUAGA-CGcacuCCGCUaUGUGCGCG- -5'
15798 5' -53.8 NC_004065.1 + 103124 0.66 0.98981
Target:  5'- aGAUCgacGUGcucguccGAGGCGuucaGCACGCGUa -3'
miRNA:   3'- gCUAGa--CGCa------CUCCGCua--UGUGCGCG- -5'
15798 5' -53.8 NC_004065.1 + 187036 0.66 0.988473
Target:  5'- gGcgCgGCGUcuGAGGUGAUGCGuagcaccgcUGCGCu -3'
miRNA:   3'- gCuaGaCGCA--CUCCGCUAUGU---------GCGCG- -5'
15798 5' -53.8 NC_004065.1 + 21506 0.66 0.988473
Target:  5'- -cGUCUGuCGUGAuGGCGGUGgucCGUGUGCg -3'
miRNA:   3'- gcUAGAC-GCACU-CCGCUAU---GUGCGCG- -5'
15798 5' -53.8 NC_004065.1 + 141578 0.66 0.988473
Target:  5'- --cUCUGCGcGAGGCGAccGCcaccaACGCGa -3'
miRNA:   3'- gcuAGACGCaCUCCGCUa-UG-----UGCGCg -5'
15798 5' -53.8 NC_004065.1 + 20852 0.66 0.987901
Target:  5'- cCGGUCcGCGagcgguagguagaGAGGCGAgcgACACGgcCGCg -3'
miRNA:   3'- -GCUAGaCGCa------------CUCCGCUa--UGUGC--GCG- -5'
15798 5' -53.8 NC_004065.1 + 4764 0.66 0.987003
Target:  5'- cCGAUCU-CGUGaAGGaCG-UGCACGaCGUg -3'
miRNA:   3'- -GCUAGAcGCAC-UCC-GCuAUGUGC-GCG- -5'
15798 5' -53.8 NC_004065.1 + 214101 0.66 0.987003
Target:  5'- aGAaaUCUGacuCGUGcGGcCGGUcGCACGCGCc -3'
miRNA:   3'- gCU--AGAC---GCACuCC-GCUA-UGUGCGCG- -5'
15798 5' -53.8 NC_004065.1 + 198084 0.66 0.986848
Target:  5'- gGAUCUGaucGAGGCGGauucgccUACgGCGCGUc -3'
miRNA:   3'- gCUAGACgcaCUCCGCU-------AUG-UGCGCG- -5'
15798 5' -53.8 NC_004065.1 + 205565 0.66 0.986054
Target:  5'- uCGAUCUGUGguaauacgaccgcGGGCaaucugugACACGCGCa -3'
miRNA:   3'- -GCUAGACGCac-----------UCCGcua-----UGUGCGCG- -5'
15798 5' -53.8 NC_004065.1 + 118804 0.66 0.985392
Target:  5'- uCGGUCUGCGaacacgUGuGGCGA---GCGUGUc -3'
miRNA:   3'- -GCUAGACGC------ACuCCGCUaugUGCGCG- -5'
15798 5' -53.8 NC_004065.1 + 121419 0.66 0.985392
Target:  5'- aGAccCUGCaGguacugGAGGCGAUGCGUGCGg -3'
miRNA:   3'- gCUa-GACG-Ca-----CUCCGCUAUGUGCGCg -5'
15798 5' -53.8 NC_004065.1 + 165865 0.66 0.983634
Target:  5'- aCGGUCUcucaCGgucccGaAGGCGAggccGCACGCGCu -3'
miRNA:   3'- -GCUAGAc---GCa----C-UCCGCUa---UGUGCGCG- -5'
15798 5' -53.8 NC_004065.1 + 103519 0.66 0.983634
Target:  5'- aCGAUCgcgcgGCGcauGGCGAcGCGgGUGCa -3'
miRNA:   3'- -GCUAGa----CGCacuCCGCUaUGUgCGCG- -5'
15798 5' -53.8 NC_004065.1 + 127465 0.66 0.983634
Target:  5'- uCGAUCUcccCGggGAGGUGGU-CGgGCGCg -3'
miRNA:   3'- -GCUAGAc--GCa-CUCCGCUAuGUgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.