Results 1 - 15 of 15 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1580 | 3' | -51.6 | NC_001347.2 | + | 188979 | 0.66 | 0.998217 |
Target: 5'- uGGGCUCCGACG-GcGcCGUUGcccggggauAUGAa -3' miRNA: 3'- cCCCGAGGCUGCaC-C-GCAAUau-------UACU- -5' |
|||||||
1580 | 3' | -51.6 | NC_001347.2 | + | 185495 | 1.12 | 0.007958 |
Target: 5'- aGGGGCUCCGACGUGGCGUUAUAAUGAa -3' miRNA: 3'- -CCCCGAGGCUGCACCGCAAUAUUACU- -5' |
|||||||
1580 | 3' | -51.6 | NC_001347.2 | + | 30091 | 0.72 | 0.926391 |
Target: 5'- cGGGacgCCGAUG-GGCGUUuUGAUGAa -3' miRNA: 3'- cCCCga-GGCUGCaCCGCAAuAUUACU- -5' |
|||||||
1580 | 3' | -51.6 | NC_001347.2 | + | 108947 | 0.71 | 0.950038 |
Target: 5'- uGGGCUCUGACGUGGaagaGgaccugacGAUGAc -3' miRNA: 3'- cCCCGAGGCUGCACCg---Caaua----UUACU- -5' |
|||||||
1580 | 3' | -51.6 | NC_001347.2 | + | 36682 | 0.71 | 0.950038 |
Target: 5'- cGGGCUCCGGCG-GGUGgcc---UGAg -3' miRNA: 3'- cCCCGAGGCUGCaCCGCaauauuACU- -5' |
|||||||
1580 | 3' | -51.6 | NC_001347.2 | + | 140636 | 0.71 | 0.954071 |
Target: 5'- gGGuGGCggUCGugGUGGUGgggGUGGUGGg -3' miRNA: 3'- -CC-CCGa-GGCugCACCGCaa-UAUUACU- -5' |
|||||||
1580 | 3' | -51.6 | NC_001347.2 | + | 78352 | 0.7 | 0.967679 |
Target: 5'- cGGGCggacCCGGCGUGGUGggAcccggcggcgccgUGGUGGg -3' miRNA: 3'- cCCCGa---GGCUGCACCGCaaU-------------AUUACU- -5' |
|||||||
1580 | 3' | -51.6 | NC_001347.2 | + | 84820 | 0.69 | 0.97624 |
Target: 5'- aGGGGCUcaCCGGCGUGGUa--------- -3' miRNA: 3'- -CCCCGA--GGCUGCACCGcaauauuacu -5' |
|||||||
1580 | 3' | -51.6 | NC_001347.2 | + | 228379 | 0.69 | 0.982816 |
Target: 5'- cGGGGUgcggcgguuUCCGACGUGGagauGUggaGAUGGg -3' miRNA: 3'- -CCCCG---------AGGCUGCACCg---CAauaUUACU- -5' |
|||||||
1580 | 3' | -51.6 | NC_001347.2 | + | 149694 | 0.68 | 0.990603 |
Target: 5'- uGGGC-CCGACGUGGaCGUc------- -3' miRNA: 3'- cCCCGaGGCUGCACC-GCAauauuacu -5' |
|||||||
1580 | 3' | -51.6 | NC_001347.2 | + | 178066 | 0.68 | 0.991757 |
Target: 5'- gGGGGacugaUCCaGGCGUcGGCGUUGggcaaGGUGGc -3' miRNA: 3'- -CCCCg----AGG-CUGCA-CCGCAAUa----UUACU- -5' |
|||||||
1580 | 3' | -51.6 | NC_001347.2 | + | 160067 | 0.67 | 0.992697 |
Target: 5'- -cGGCUCCGugGUcGUGUuugugucUGUGGUGGu -3' miRNA: 3'- ccCCGAGGCugCAcCGCA-------AUAUUACU- -5' |
|||||||
1580 | 3' | -51.6 | NC_001347.2 | + | 67512 | 0.67 | 0.994868 |
Target: 5'- -cGGUgCCGGCGgccacguccgucacGGCGUUAUGGUGGu -3' miRNA: 3'- ccCCGaGGCUGCa-------------CCGCAAUAUUACU- -5' |
|||||||
1580 | 3' | -51.6 | NC_001347.2 | + | 96191 | 0.66 | 0.997881 |
Target: 5'- cGGGCaCgGGCGUGGCGgccGUAGg-- -3' miRNA: 3'- cCCCGaGgCUGCACCGCaa-UAUUacu -5' |
|||||||
1580 | 3' | -51.6 | NC_001347.2 | + | 140567 | 0.75 | 0.828902 |
Target: 5'- cGGGGUUCCgGGCGgcggugcUGGCGgggGUGGUGGa -3' miRNA: 3'- -CCCCGAGG-CUGC-------ACCGCaa-UAUUACU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home