miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1580 5' -56.3 NC_001347.2 + 81592 0.66 0.960257
Target:  5'- uCGCCGCcggCCgguCGCU-CGCGAaaagccgUGGCa -3'
miRNA:   3'- -GCGGUGa--GGau-GCGGuGCGCUa------ACCG- -5'
1580 5' -56.3 NC_001347.2 + 39844 0.66 0.960257
Target:  5'- -uCCAUUCCgg-GCCGCGUGGUgGGUc -3'
miRNA:   3'- gcGGUGAGGaugCGGUGCGCUAaCCG- -5'
1580 5' -56.3 NC_001347.2 + 106562 0.66 0.960257
Target:  5'- -uCUGCUCuCUACGCCGCuGCaAUUGGg -3'
miRNA:   3'- gcGGUGAG-GAUGCGGUG-CGcUAACCg -5'
1580 5' -56.3 NC_001347.2 + 199614 0.66 0.960257
Target:  5'- uCGCCACcgCCgccgGCGCCGuucucgggcaGCGAg-GGCa -3'
miRNA:   3'- -GCGGUGa-GGa---UGCGGUg---------CGCUaaCCG- -5'
1580 5' -56.3 NC_001347.2 + 140175 0.66 0.958151
Target:  5'- gCGCCGCUCaaggacgaacgcuaUGgGCCGCaGCauUUGGCg -3'
miRNA:   3'- -GCGGUGAGg-------------AUgCGGUG-CGcuAACCG- -5'
1580 5' -56.3 NC_001347.2 + 228722 0.66 0.956705
Target:  5'- uCGCCACcgCCgcgGCGgauuuCCGCGCGGgggacggGGUa -3'
miRNA:   3'- -GCGGUGa-GGa--UGC-----GGUGCGCUaa-----CCG- -5'
1580 5' -56.3 NC_001347.2 + 2397 0.66 0.956705
Target:  5'- cCGCCGC-Cg-AgGCCGCGCGGc-GGCu -3'
miRNA:   3'- -GCGGUGaGgaUgCGGUGCGCUaaCCG- -5'
1580 5' -56.3 NC_001347.2 + 65236 0.66 0.956705
Target:  5'- uGCCGCggCUACGaccuCACGCGAcugucauacgGGCg -3'
miRNA:   3'- gCGGUGagGAUGCg---GUGCGCUaa--------CCG- -5'
1580 5' -56.3 NC_001347.2 + 194573 0.66 0.956705
Target:  5'- gCGCUucuCgugCCUGCGCCAgGC---UGGCc -3'
miRNA:   3'- -GCGGu--Ga--GGAUGCGGUgCGcuaACCG- -5'
1580 5' -56.3 NC_001347.2 + 21916 0.66 0.956705
Target:  5'- aGCC-CUCgCUACGCCucuAUGuCGAaaaugUGGCu -3'
miRNA:   3'- gCGGuGAG-GAUGCGG---UGC-GCUa----ACCG- -5'
1580 5' -56.3 NC_001347.2 + 107812 0.66 0.952943
Target:  5'- gCGCUggaGgaCCUGCuGcCCAUGCGAcUGGCg -3'
miRNA:   3'- -GCGG---UgaGGAUG-C-GGUGCGCUaACCG- -5'
1580 5' -56.3 NC_001347.2 + 166392 0.66 0.952943
Target:  5'- gCGCCuuGCUCauCUGgGCCACcguGCGGUgacccuUGGCg -3'
miRNA:   3'- -GCGG--UGAG--GAUgCGGUG---CGCUA------ACCG- -5'
1580 5' -56.3 NC_001347.2 + 127098 0.66 0.952555
Target:  5'- aCGUCGCUaCCUGCuacccgaGCC-CGCGc-UGGCa -3'
miRNA:   3'- -GCGGUGA-GGAUG-------CGGuGCGCuaACCG- -5'
1580 5' -56.3 NC_001347.2 + 156642 0.66 0.950583
Target:  5'- gCGCCGCUgccgggccucggccgCCgcCGCCACccauggcgGCGGgucgUGGCg -3'
miRNA:   3'- -GCGGUGA---------------GGauGCGGUG--------CGCUa---ACCG- -5'
1580 5' -56.3 NC_001347.2 + 200428 0.66 0.948967
Target:  5'- aGUCACUaCCUGuguUGCCagACGCGccUGGCc -3'
miRNA:   3'- gCGGUGA-GGAU---GCGG--UGCGCuaACCG- -5'
1580 5' -56.3 NC_001347.2 + 90896 0.66 0.948967
Target:  5'- cCGCCAagaUCCaggaGCGCUACGCGGagcuGCa -3'
miRNA:   3'- -GCGGUg--AGGa---UGCGGUGCGCUaac-CG- -5'
1580 5' -56.3 NC_001347.2 + 11785 0.66 0.944774
Target:  5'- uGCCGCUCC-ACGCCGCgGCa------ -3'
miRNA:   3'- gCGGUGAGGaUGCGGUG-CGcuaaccg -5'
1580 5' -56.3 NC_001347.2 + 67374 0.66 0.940362
Target:  5'- cCGCCucggACUCCUGCaccgucucGCC-CGCGcugugGGCg -3'
miRNA:   3'- -GCGG----UGAGGAUG--------CGGuGCGCuaa--CCG- -5'
1580 5' -56.3 NC_001347.2 + 116872 0.66 0.940362
Target:  5'- aGCC-CUCCUcuuCGCCgcccGCGCGccccccgGGCa -3'
miRNA:   3'- gCGGuGAGGAu--GCGG----UGCGCuaa----CCG- -5'
1580 5' -56.3 NC_001347.2 + 1710 0.66 0.940362
Target:  5'- aCGgCGCUCggacgggagCUGCGCCG-GCGGUgGGCc -3'
miRNA:   3'- -GCgGUGAG---------GAUGCGGUgCGCUAaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.