miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1580 5' -56.3 NC_001347.2 + 185529 1.11 0.003474
Target:  5'- gCGCCACUCCUACGCCACGCGAUUGGCc -3'
miRNA:   3'- -GCGGUGAGGAUGCGGUGCGCUAACCG- -5'
1580 5' -56.3 NC_001347.2 + 24963 0.84 0.17424
Target:  5'- cCGUCACguUCUUAUGCCACGCGAUgUGGCg -3'
miRNA:   3'- -GCGGUG--AGGAUGCGGUGCGCUA-ACCG- -5'
1580 5' -56.3 NC_001347.2 + 11809 0.79 0.326841
Target:  5'- gCGCCAgUCCUAuCGCUACGCGucuggGGCc -3'
miRNA:   3'- -GCGGUgAGGAU-GCGGUGCGCuaa--CCG- -5'
1580 5' -56.3 NC_001347.2 + 22193 0.79 0.341405
Target:  5'- uGCCGCUCCaucGCaGCCACGCGcuggUGGCc -3'
miRNA:   3'- gCGGUGAGGa--UG-CGGUGCGCua--ACCG- -5'
1580 5' -56.3 NC_001347.2 + 142044 0.74 0.568488
Target:  5'- gCGCUACcUCUugGCUACGCGucUGGCc -3'
miRNA:   3'- -GCGGUGaGGAugCGGUGCGCuaACCG- -5'
1580 5' -56.3 NC_001347.2 + 153850 0.74 0.568488
Target:  5'- gCGCCACgUCCUcgugUGCCGCGCcGAgcGGCg -3'
miRNA:   3'- -GCGGUG-AGGAu---GCGGUGCG-CUaaCCG- -5'
1580 5' -56.3 NC_001347.2 + 80860 0.73 0.676909
Target:  5'- aCGCCACUaccaCCgcCGCCGCuaGAaUGGCg -3'
miRNA:   3'- -GCGGUGA----GGauGCGGUGcgCUaACCG- -5'
1580 5' -56.3 NC_001347.2 + 28221 0.72 0.686708
Target:  5'- uGCUAC-CCUGCgcucugcguuGCCACGCGuacUGGCu -3'
miRNA:   3'- gCGGUGaGGAUG----------CGGUGCGCua-ACCG- -5'
1580 5' -56.3 NC_001347.2 + 67869 0.72 0.725403
Target:  5'- uGCuCGCUCgUGCGCUACGgGA--GGCu -3'
miRNA:   3'- gCG-GUGAGgAUGCGGUGCgCUaaCCG- -5'
1580 5' -56.3 NC_001347.2 + 130137 0.71 0.744334
Target:  5'- gGCCGuCUCgCUACGCCGuCGCGcgUuGCa -3'
miRNA:   3'- gCGGU-GAG-GAUGCGGU-GCGCuaAcCG- -5'
1580 5' -56.3 NC_001347.2 + 136195 0.71 0.753665
Target:  5'- uGCCGCggaCUGCGCCGggggGCGGcgGGCa -3'
miRNA:   3'- gCGGUGag-GAUGCGGUg---CGCUaaCCG- -5'
1580 5' -56.3 NC_001347.2 + 193742 0.71 0.753665
Target:  5'- cCGCCGCUCgUUGCGCCuACGUaGA--GGCg -3'
miRNA:   3'- -GCGGUGAG-GAUGCGG-UGCG-CUaaCCG- -5'
1580 5' -56.3 NC_001347.2 + 16810 0.71 0.762897
Target:  5'- uCGCCGCUacgaacacggUCUACGgCGCGCGGccaGGCu -3'
miRNA:   3'- -GCGGUGA----------GGAUGCgGUGCGCUaa-CCG- -5'
1580 5' -56.3 NC_001347.2 + 158566 0.71 0.762897
Target:  5'- cCGCguCUCCUGCGCCucacuuCGCacg-GGCa -3'
miRNA:   3'- -GCGguGAGGAUGCGGu-----GCGcuaaCCG- -5'
1580 5' -56.3 NC_001347.2 + 196199 0.71 0.77202
Target:  5'- gCGCCGCcguuuuuuUCC-ACGCCACGUuuaUGGCg -3'
miRNA:   3'- -GCGGUG--------AGGaUGCGGUGCGcuaACCG- -5'
1580 5' -56.3 NC_001347.2 + 103566 0.7 0.797787
Target:  5'- aCGCCGCUgCUGCagGCCuguCGUGAacuguuuUUGGCc -3'
miRNA:   3'- -GCGGUGAgGAUG--CGGu--GCGCU-------AACCG- -5'
1580 5' -56.3 NC_001347.2 + 196332 0.7 0.807264
Target:  5'- uGaCCACUCCUcuuuguCGCCcucCGCGG-UGGCg -3'
miRNA:   3'- gC-GGUGAGGAu-----GCGGu--GCGCUaACCG- -5'
1580 5' -56.3 NC_001347.2 + 30591 0.7 0.807264
Target:  5'- gCGCCGggcggcUUCCUGCgGCCGgcCGCGGUgccGGCg -3'
miRNA:   3'- -GCGGU------GAGGAUG-CGGU--GCGCUAa--CCG- -5'
1580 5' -56.3 NC_001347.2 + 139029 0.7 0.810666
Target:  5'- gGCCACUCuCU-CGCUAUGCGAccguuccucgagcgUGGUg -3'
miRNA:   3'- gCGGUGAG-GAuGCGGUGCGCUa-------------ACCG- -5'
1580 5' -56.3 NC_001347.2 + 17140 0.7 0.815724
Target:  5'- cCGCCGC-CC-AUGCCACGCGAc---- -3'
miRNA:   3'- -GCGGUGaGGaUGCGGUGCGCUaaccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.