miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1580 5' -56.3 NC_001347.2 + 1236 0.67 0.930872
Target:  5'- gGCCGCgCCaUGCGCaaguggucgcaGCGCGAcgcgGGCa -3'
miRNA:   3'- gCGGUGaGG-AUGCGg----------UGCGCUaa--CCG- -5'
1580 5' -56.3 NC_001347.2 + 1710 0.66 0.940362
Target:  5'- aCGgCGCUCggacgggagCUGCGCCG-GCGGUgGGCc -3'
miRNA:   3'- -GCgGUGAG---------GAUGCGGUgCGCUAaCCG- -5'
1580 5' -56.3 NC_001347.2 + 2397 0.66 0.956705
Target:  5'- cCGCCGC-Cg-AgGCCGCGCGGc-GGCu -3'
miRNA:   3'- -GCGGUGaGgaUgCGGUGCGCUaaCCG- -5'
1580 5' -56.3 NC_001347.2 + 2468 0.68 0.877221
Target:  5'- gCGCUGCaCCUgcacccgcGCGCCGCGCuGUgGGCg -3'
miRNA:   3'- -GCGGUGaGGA--------UGCGGUGCGcUAaCCG- -5'
1580 5' -56.3 NC_001347.2 + 5780 0.69 0.832168
Target:  5'- cCGCCGCaUCUGuCGCCGC-CaAUUGGCg -3'
miRNA:   3'- -GCGGUGaGGAU-GCGGUGcGcUAACCG- -5'
1580 5' -56.3 NC_001347.2 + 11785 0.66 0.944774
Target:  5'- uGCCGCUCC-ACGCCGCgGCa------ -3'
miRNA:   3'- gCGGUGAGGaUGCGGUG-CGcuaaccg -5'
1580 5' -56.3 NC_001347.2 + 11809 0.79 0.326841
Target:  5'- gCGCCAgUCCUAuCGCUACGCGucuggGGCc -3'
miRNA:   3'- -GCGGUgAGGAU-GCGGUGCGCuaa--CCG- -5'
1580 5' -56.3 NC_001347.2 + 11948 0.67 0.925793
Target:  5'- -cCCAUUUCaGCGCCACcCGGaUGGCg -3'
miRNA:   3'- gcGGUGAGGaUGCGGUGcGCUaACCG- -5'
1580 5' -56.3 NC_001347.2 + 15359 0.69 0.855544
Target:  5'- aCGCCGCguugCCcgaugagcgACGCgaGCGCGAgcGGCg -3'
miRNA:   3'- -GCGGUGa---GGa--------UGCGg-UGCGCUaaCCG- -5'
1580 5' -56.3 NC_001347.2 + 16381 0.68 0.877221
Target:  5'- gCGUCACggUCaugACGCCgACGCG-UUGGCc -3'
miRNA:   3'- -GCGGUG--AGga-UGCGG-UGCGCuAACCG- -5'
1580 5' -56.3 NC_001347.2 + 16810 0.71 0.762897
Target:  5'- uCGCCGCUacgaacacggUCUACGgCGCGCGGccaGGCu -3'
miRNA:   3'- -GCGGUGA----------GGAUGCgGUGCGCUaa-CCG- -5'
1580 5' -56.3 NC_001347.2 + 17140 0.7 0.815724
Target:  5'- cCGCCGC-CC-AUGCCACGCGAc---- -3'
miRNA:   3'- -GCGGUGaGGaUGCGGUGCGCUaaccg -5'
1580 5' -56.3 NC_001347.2 + 20943 0.67 0.914964
Target:  5'- aCGCuCGCUCUgcuaACGaCGC-CGAUUGGCu -3'
miRNA:   3'- -GCG-GUGAGGa---UGCgGUGcGCUAACCG- -5'
1580 5' -56.3 NC_001347.2 + 21513 0.68 0.890659
Target:  5'- uGCCugUuCCUGCuGCUACGCGGUccGUc -3'
miRNA:   3'- gCGGugA-GGAUG-CGGUGCGCUAacCG- -5'
1580 5' -56.3 NC_001347.2 + 21916 0.66 0.956705
Target:  5'- aGCC-CUCgCUACGCCucuAUGuCGAaaaugUGGCu -3'
miRNA:   3'- gCGGuGAG-GAUGCGG---UGC-GCUa----ACCG- -5'
1580 5' -56.3 NC_001347.2 + 22193 0.79 0.341405
Target:  5'- uGCCGCUCCaucGCaGCCACGCGcuggUGGCc -3'
miRNA:   3'- gCGGUGAGGa--UG-CGGUGCGCua--ACCG- -5'
1580 5' -56.3 NC_001347.2 + 24963 0.84 0.17424
Target:  5'- cCGUCACguUCUUAUGCCACGCGAUgUGGCg -3'
miRNA:   3'- -GCGGUG--AGGAUGCGGUGCGCUA-ACCG- -5'
1580 5' -56.3 NC_001347.2 + 28221 0.72 0.686708
Target:  5'- uGCUAC-CCUGCgcucugcguuGCCACGCGuacUGGCu -3'
miRNA:   3'- gCGGUGaGGAUG----------CGGUGCGCua-ACCG- -5'
1580 5' -56.3 NC_001347.2 + 30591 0.7 0.807264
Target:  5'- gCGCCGggcggcUUCCUGCgGCCGgcCGCGGUgccGGCg -3'
miRNA:   3'- -GCGGU------GAGGAUG-CGGU--GCGCUAa--CCG- -5'
1580 5' -56.3 NC_001347.2 + 37972 0.68 0.903248
Target:  5'- gGCCGCUCCcACuGCU-CGCGGUccagcucgGGCa -3'
miRNA:   3'- gCGGUGAGGaUG-CGGuGCGCUAa-------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.