miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15800 5' -64.5 NC_004065.1 + 188538 0.66 0.671552
Target:  5'- cUCcCCGUCCCGaCgCCCCG-GCGCaCGc -3'
miRNA:   3'- cAGaGGCAGGGUcG-GGGGCuCGCG-GC- -5'
15800 5' -64.5 NC_004065.1 + 186864 0.66 0.671552
Target:  5'- uGUCUgCCGUUCCcGCCgUCCGuGCGCg- -3'
miRNA:   3'- -CAGA-GGCAGGGuCGG-GGGCuCGCGgc -5'
15800 5' -64.5 NC_004065.1 + 65405 0.66 0.665946
Target:  5'- -cCUCCGaggcugcgagccucuUCCCcGCCUgCGAGCGgCGg -3'
miRNA:   3'- caGAGGC---------------AGGGuCGGGgGCUCGCgGC- -5'
15800 5' -64.5 NC_004065.1 + 102373 0.66 0.662204
Target:  5'- ---aUgGUCCCGccGCCCUCG-GCGCCGc -3'
miRNA:   3'- cagaGgCAGGGU--CGGGGGCuCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 199954 0.66 0.652835
Target:  5'- -gCUCCG-CCacggCGGUCCCgucucugggauCGAGCGCCGa -3'
miRNA:   3'- caGAGGCaGG----GUCGGGG-----------GCUCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 17194 0.66 0.643452
Target:  5'- cGUCcUCGUCCCcaGGUCCCUugagcAGCGCCa -3'
miRNA:   3'- -CAGaGGCAGGG--UCGGGGGc----UCGCGGc -5'
15800 5' -64.5 NC_004065.1 + 198905 0.66 0.643452
Target:  5'- uUC-CCGU-CCAGCCuCUCGAucgcGCGCCGc -3'
miRNA:   3'- cAGaGGCAgGGUCGG-GGGCU----CGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 112619 0.66 0.643452
Target:  5'- -aCUCCGcgCCgCgAGCCCagcgcgcgcggCCGAGCGUCGa -3'
miRNA:   3'- caGAGGCa-GG-G-UCGGG-----------GGCUCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 18110 0.66 0.634062
Target:  5'- aUCUCUGUCgCGGaagaaCCUCCGGGCccGCCGc -3'
miRNA:   3'- cAGAGGCAGgGUC-----GGGGGCUCG--CGGC- -5'
15800 5' -64.5 NC_004065.1 + 194419 0.66 0.634062
Target:  5'- ----gCGUUCCAGacggaguucUCCCCGGGCGCCu -3'
miRNA:   3'- cagagGCAGGGUC---------GGGGGCUCGCGGc -5'
15800 5' -64.5 NC_004065.1 + 153182 0.66 0.634062
Target:  5'- cGUCagCGagggaUCCCAgGCCCUguacaucgCGAGCGCCGc -3'
miRNA:   3'- -CAGagGC-----AGGGU-CGGGG--------GCUCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 67852 0.66 0.634062
Target:  5'- gGUCgUCCGaUCCCcgauCCUCCGAGgGCUGa -3'
miRNA:   3'- -CAG-AGGC-AGGGuc--GGGGGCUCgCGGC- -5'
15800 5' -64.5 NC_004065.1 + 64481 0.66 0.634062
Target:  5'- -cCUCCGaUCCAGCCaCCCGuccccacGCGCUc -3'
miRNA:   3'- caGAGGCaGGGUCGG-GGGCu------CGCGGc -5'
15800 5' -64.5 NC_004065.1 + 205168 0.66 0.634062
Target:  5'- cGUCgaggccgCCGUCgCC-GCCaacaUCGGGCGCCGc -3'
miRNA:   3'- -CAGa------GGCAG-GGuCGGg---GGCUCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 179171 0.66 0.624671
Target:  5'- cUCUCCGUCagAGgCCCCGcGC-CCGg -3'
miRNA:   3'- cAGAGGCAGggUCgGGGGCuCGcGGC- -5'
15800 5' -64.5 NC_004065.1 + 29167 0.66 0.624671
Target:  5'- ---aCCG-CCCGcGCCCCCGucGaCGCCGa -3'
miRNA:   3'- cagaGGCaGGGU-CGGGGGCu-C-GCGGC- -5'
15800 5' -64.5 NC_004065.1 + 99344 0.66 0.615284
Target:  5'- -cCUCCGccUCCUcGCCCgaCGAGCGuuGg -3'
miRNA:   3'- caGAGGC--AGGGuCGGGg-GCUCGCggC- -5'
15800 5' -64.5 NC_004065.1 + 188576 0.67 0.609656
Target:  5'- aGUCU-CGUCCCGGCCCaaaaggacguccaucUCGAGCcgGUCGu -3'
miRNA:   3'- -CAGAgGCAGGGUCGGG---------------GGCUCG--CGGC- -5'
15800 5' -64.5 NC_004065.1 + 125250 0.67 0.605908
Target:  5'- ---cCCGUCUCgaaGGCCgCCGGGuCGCCGu -3'
miRNA:   3'- cagaGGCAGGG---UCGGgGGCUC-GCGGC- -5'
15800 5' -64.5 NC_004065.1 + 27814 0.67 0.605908
Target:  5'- ---gUCG-CCCAGCCCuCCGAuGUGCCu -3'
miRNA:   3'- cagaGGCaGGGUCGGG-GGCU-CGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.