Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15800 | 5' | -64.5 | NC_004065.1 | + | 29167 | 0.66 | 0.624671 |
Target: 5'- ---aCCG-CCCGcGCCCCCGucGaCGCCGa -3' miRNA: 3'- cagaGGCaGGGU-CGGGGGCu-C-GCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 199954 | 0.66 | 0.652835 |
Target: 5'- -gCUCCG-CCacggCGGUCCCgucucugggauCGAGCGCCGa -3' miRNA: 3'- caGAGGCaGG----GUCGGGG-----------GCUCGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 198905 | 0.66 | 0.643452 |
Target: 5'- uUC-CCGU-CCAGCCuCUCGAucgcGCGCCGc -3' miRNA: 3'- cAGaGGCAgGGUCGG-GGGCU----CGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 17194 | 0.66 | 0.643452 |
Target: 5'- cGUCcUCGUCCCcaGGUCCCUugagcAGCGCCa -3' miRNA: 3'- -CAGaGGCAGGG--UCGGGGGc----UCGCGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 18110 | 0.66 | 0.634062 |
Target: 5'- aUCUCUGUCgCGGaagaaCCUCCGGGCccGCCGc -3' miRNA: 3'- cAGAGGCAGgGUC-----GGGGGCUCG--CGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 194419 | 0.66 | 0.634062 |
Target: 5'- ----gCGUUCCAGacggaguucUCCCCGGGCGCCu -3' miRNA: 3'- cagagGCAGGGUC---------GGGGGCUCGCGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 99344 | 0.66 | 0.615284 |
Target: 5'- -cCUCCGccUCCUcGCCCgaCGAGCGuuGg -3' miRNA: 3'- caGAGGC--AGGGuCGGGg-GCUCGCggC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 188538 | 0.66 | 0.671552 |
Target: 5'- cUCcCCGUCCCGaCgCCCCG-GCGCaCGc -3' miRNA: 3'- cAGaGGCAGGGUcG-GGGGCuCGCG-GC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 67852 | 0.66 | 0.634062 |
Target: 5'- gGUCgUCCGaUCCCcgauCCUCCGAGgGCUGa -3' miRNA: 3'- -CAG-AGGC-AGGGuc--GGGGGCUCgCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 179171 | 0.66 | 0.624671 |
Target: 5'- cUCUCCGUCagAGgCCCCGcGC-CCGg -3' miRNA: 3'- cAGAGGCAGggUCgGGGGCuCGcGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 153182 | 0.66 | 0.634062 |
Target: 5'- cGUCagCGagggaUCCCAgGCCCUguacaucgCGAGCGCCGc -3' miRNA: 3'- -CAGagGC-----AGGGU-CGGGG--------GCUCGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 205168 | 0.66 | 0.634062 |
Target: 5'- cGUCgaggccgCCGUCgCC-GCCaacaUCGGGCGCCGc -3' miRNA: 3'- -CAGa------GGCAG-GGuCGGg---GGCUCGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 65405 | 0.66 | 0.665946 |
Target: 5'- -cCUCCGaggcugcgagccucuUCCCcGCCUgCGAGCGgCGg -3' miRNA: 3'- caGAGGC---------------AGGGuCGGGgGCUCGCgGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 112619 | 0.66 | 0.643452 |
Target: 5'- -aCUCCGcgCCgCgAGCCCagcgcgcgcggCCGAGCGUCGa -3' miRNA: 3'- caGAGGCa-GG-G-UCGGG-----------GGCUCGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 102373 | 0.66 | 0.662204 |
Target: 5'- ---aUgGUCCCGccGCCCUCG-GCGCCGc -3' miRNA: 3'- cagaGgCAGGGU--CGGGGGCuCGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 186864 | 0.66 | 0.671552 |
Target: 5'- uGUCUgCCGUUCCcGCCgUCCGuGCGCg- -3' miRNA: 3'- -CAGA-GGCAGGGuCGG-GGGCuCGCGgc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 64481 | 0.66 | 0.634062 |
Target: 5'- -cCUCCGaUCCAGCCaCCCGuccccacGCGCUc -3' miRNA: 3'- caGAGGCaGGGUCGG-GGGCu------CGCGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 125250 | 0.67 | 0.605908 |
Target: 5'- ---cCCGUCUCgaaGGCCgCCGGGuCGCCGu -3' miRNA: 3'- cagaGGCAGGG---UCGGgGGCUC-GCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 27814 | 0.67 | 0.605908 |
Target: 5'- ---gUCG-CCCAGCCCuCCGAuGUGCCu -3' miRNA: 3'- cagaGGCaGGGUCGGG-GGCU-CGCGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 34438 | 0.67 | 0.568623 |
Target: 5'- ---gUCGaUCCCAGCCgucaCCCGAGCGUgGg -3' miRNA: 3'- cagaGGC-AGGGUCGG----GGGCUCGCGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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