Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15800 | 5' | -64.5 | NC_004065.1 | + | 188576 | 0.67 | 0.609656 |
Target: 5'- aGUCU-CGUCCCGGCCCaaaaggacguccaucUCGAGCcgGUCGu -3' miRNA: 3'- -CAGAgGCAGGGUCGGG---------------GGCUCG--CGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 168679 | 0.67 | 0.605908 |
Target: 5'- aUCUCCGUCUU--CgCCCGGGuCGCCGc -3' miRNA: 3'- cAGAGGCAGGGucGgGGGCUC-GCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 27814 | 0.67 | 0.605908 |
Target: 5'- ---gUCG-CCCAGCCCuCCGAuGUGCCu -3' miRNA: 3'- cagaGGCaGGGUCGGG-GGCU-CGCGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 197792 | 0.67 | 0.559383 |
Target: 5'- gGUgUCCGcguuggUCaCCAGCgCCCGcGGCGCCa -3' miRNA: 3'- -CAgAGGC------AG-GGUCGgGGGC-UCGCGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 125250 | 0.67 | 0.605908 |
Target: 5'- ---cCCGUCUCgaaGGCCgCCGGGuCGCCGu -3' miRNA: 3'- cagaGGCAGGG---UCGGgGGCUC-GCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 152600 | 0.68 | 0.51391 |
Target: 5'- cGUCgUCCGUCagCAGCgCCCGGGUcaccGCCa -3' miRNA: 3'- -CAG-AGGCAGg-GUCGgGGGCUCG----CGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 110488 | 0.68 | 0.496137 |
Target: 5'- cGUgUUCGcCCUGGCCCUCGAccacguccccGCGCCGc -3' miRNA: 3'- -CAgAGGCaGGGUCGGGGGCU----------CGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 162830 | 0.68 | 0.529217 |
Target: 5'- aUCUCCGUCCCcagacgguacggguGGUCCgUcAGCGCCu -3' miRNA: 3'- cAGAGGCAGGG--------------UCGGGgGcUCGCGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 158060 | 0.68 | 0.541035 |
Target: 5'- -cCUCCGggcugCCCGGCuCCaCCGgcGGCGUCGc -3' miRNA: 3'- caGAGGCa----GGGUCG-GG-GGC--UCGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 188334 | 0.68 | 0.541035 |
Target: 5'- cGUCUCCGcgUCCCucgcgaugcucAGCCCCagcgaggGGGCGCaCGu -3' miRNA: 3'- -CAGAGGC--AGGG-----------UCGGGGg------CUCGCG-GC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 28728 | 0.68 | 0.550185 |
Target: 5'- cUCUCCuccuccCCCGGCCgCCgGAGgGCCa -3' miRNA: 3'- cAGAGGca----GGGUCGG-GGgCUCgCGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 147285 | 0.68 | 0.522893 |
Target: 5'- uUCUgCGccUUCCAGuCCCCCGAuugggGCGCCa -3' miRNA: 3'- cAGAgGC--AGGGUC-GGGGGCU-----CGCGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 24498 | 0.68 | 0.50499 |
Target: 5'- ---aCCGcCgCCGG-CCCUGAGCGCCGg -3' miRNA: 3'- cagaGGCaG-GGUCgGGGGCUCGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 160853 | 0.68 | 0.51391 |
Target: 5'- -aCUCCGUCgCCuucGCCUCCGccucguccAGCGUCGa -3' miRNA: 3'- caGAGGCAG-GGu--CGGGGGC--------UCGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 107407 | 0.69 | 0.478648 |
Target: 5'- cGUCUCCGUCUCGGacugggaCCUCGuGCuGCCc -3' miRNA: 3'- -CAGAGGCAGGGUCg------GGGGCuCG-CGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 159340 | 0.69 | 0.478648 |
Target: 5'- uGUC-CaCGUCCaGGCCCUCGGGCaGCCu -3' miRNA: 3'- -CAGaG-GCAGGgUCGGGGGCUCG-CGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 159668 | 0.69 | 0.470018 |
Target: 5'- cGUCUCCGUCCUgGGCUCUCGAucucguuCGCCa -3' miRNA: 3'- -CAGAGGCAGGG-UCGGGGGCUc------GCGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 153913 | 0.69 | 0.470018 |
Target: 5'- gGUCUCCcUCuCCuGCUauauaggcuuuCCCGAGCGCCu -3' miRNA: 3'- -CAGAGGcAG-GGuCGG-----------GGGCUCGCGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 60169 | 0.69 | 0.461468 |
Target: 5'- cGUCaCCGUCCCcgaacccgucgcGGUUCCCGAGC-CCGu -3' miRNA: 3'- -CAGaGGCAGGG------------UCGGGGGCUCGcGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 99998 | 0.69 | 0.461468 |
Target: 5'- cGUCUUCGUCgUAGCCgCCGc-CGCCGu -3' miRNA: 3'- -CAGAGGCAGgGUCGGgGGCucGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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