miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15800 5' -64.5 NC_004065.1 + 116080 1.07 0.001219
Target:  5'- cGUCUCCGUCCCAGCCCCCGAGCGCCGc -3'
miRNA:   3'- -CAGAGGCAGGGUCGGGGGCUCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 86726 0.77 0.154923
Target:  5'- -cCUCCuGcCCCGGCCCCCGA-CGCCGc -3'
miRNA:   3'- caGAGG-CaGGGUCGGGGGCUcGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 45105 0.77 0.166171
Target:  5'- cGUCUCCcggccgcUCCCgAGCCaCCCGGGCGCCc -3'
miRNA:   3'- -CAGAGGc------AGGG-UCGG-GGGCUCGCGGc -5'
15800 5' -64.5 NC_004065.1 + 45507 0.72 0.303119
Target:  5'- aUCUCCGUCCaCGucggacggucuacGCCaCCCG-GCGCCGc -3'
miRNA:   3'- cAGAGGCAGG-GU-------------CGG-GGGCuCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 123747 0.72 0.316843
Target:  5'- -cCUCCGgUCCAGCaCCUCGGuGCGCCGc -3'
miRNA:   3'- caGAGGCaGGGUCG-GGGGCU-CGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 202736 0.72 0.337253
Target:  5'- ---gCCGUUUCGGCUcguguCCCGAGCGCCGu -3'
miRNA:   3'- cagaGGCAGGGUCGG-----GGGCUCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 31029 0.7 0.420006
Target:  5'- -cCUCgG-CCgCGGCCCugCCGAGCGCCa -3'
miRNA:   3'- caGAGgCaGG-GUCGGG--GGCUCGCGGc -5'
15800 5' -64.5 NC_004065.1 + 113874 0.7 0.420006
Target:  5'- -cCUaCCGaCCCGG-CCCCGAGCcGCCGc -3'
miRNA:   3'- caGA-GGCaGGGUCgGGGGCUCG-CGGC- -5'
15800 5' -64.5 NC_004065.1 + 3831 0.69 0.442121
Target:  5'- gGUCUCCGUggagCCCGcGCCCUCGuuaagcugggaagaAGCGUCGc -3'
miRNA:   3'- -CAGAGGCA----GGGU-CGGGGGC--------------UCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 20648 0.69 0.444618
Target:  5'- cGUCUCCGUCgCAGgCCUCGGaguacGCGUCu -3'
miRNA:   3'- -CAGAGGCAGgGUCgGGGGCU-----CGCGGc -5'
15800 5' -64.5 NC_004065.1 + 99998 0.69 0.461468
Target:  5'- cGUCUUCGUCgUAGCCgCCGc-CGCCGu -3'
miRNA:   3'- -CAGAGGCAGgGUCGGgGGCucGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 60169 0.69 0.461468
Target:  5'- cGUCaCCGUCCCcgaacccgucgcGGUUCCCGAGC-CCGu -3'
miRNA:   3'- -CAGaGGCAGGG------------UCGGGGGCUCGcGGC- -5'
15800 5' -64.5 NC_004065.1 + 200610 0.69 0.461468
Target:  5'- uUCUCCcugCCCuGGCCCaCCG-GCGCCu -3'
miRNA:   3'- cAGAGGca-GGG-UCGGG-GGCuCGCGGc -5'
15800 5' -64.5 NC_004065.1 + 159668 0.69 0.470018
Target:  5'- cGUCUCCGUCCUgGGCUCUCGAucucguuCGCCa -3'
miRNA:   3'- -CAGAGGCAGGG-UCGGGGGCUc------GCGGc -5'
15800 5' -64.5 NC_004065.1 + 153913 0.69 0.470018
Target:  5'- gGUCUCCcUCuCCuGCUauauaggcuuuCCCGAGCGCCu -3'
miRNA:   3'- -CAGAGGcAG-GGuCGG-----------GGGCUCGCGGc -5'
15800 5' -64.5 NC_004065.1 + 159340 0.69 0.478648
Target:  5'- uGUC-CaCGUCCaGGCCCUCGGGCaGCCu -3'
miRNA:   3'- -CAGaG-GCAGGgUCGGGGGCUCG-CGGc -5'
15800 5' -64.5 NC_004065.1 + 107407 0.69 0.478648
Target:  5'- cGUCUCCGUCUCGGacugggaCCUCGuGCuGCCc -3'
miRNA:   3'- -CAGAGGCAGGGUCg------GGGGCuCG-CGGc -5'
15800 5' -64.5 NC_004065.1 + 133360 0.69 0.478648
Target:  5'- -cCUCCGUCgggCgAGCCCgCCGA-CGCCGa -3'
miRNA:   3'- caGAGGCAG---GgUCGGG-GGCUcGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 110488 0.68 0.496137
Target:  5'- cGUgUUCGcCCUGGCCCUCGAccacguccccGCGCCGc -3'
miRNA:   3'- -CAgAGGCaGGGUCGGGGGCU----------CGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 24498 0.68 0.50499
Target:  5'- ---aCCGcCgCCGG-CCCUGAGCGCCGg -3'
miRNA:   3'- cagaGGCaG-GGUCgGGGGCUCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.