miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15800 5' -64.5 NC_004065.1 + 160853 0.68 0.51391
Target:  5'- -aCUCCGUCgCCuucGCCUCCGccucguccAGCGUCGa -3'
miRNA:   3'- caGAGGCAG-GGu--CGGGGGC--------UCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 152600 0.68 0.51391
Target:  5'- cGUCgUCCGUCagCAGCgCCCGGGUcaccGCCa -3'
miRNA:   3'- -CAG-AGGCAGg-GUCGgGGGCUCG----CGGc -5'
15800 5' -64.5 NC_004065.1 + 147285 0.68 0.522893
Target:  5'- uUCUgCGccUUCCAGuCCCCCGAuugggGCGCCa -3'
miRNA:   3'- cAGAgGC--AGGGUC-GGGGGCU-----CGCGGc -5'
15800 5' -64.5 NC_004065.1 + 162830 0.68 0.529217
Target:  5'- aUCUCCGUCCCcagacgguacggguGGUCCgUcAGCGCCu -3'
miRNA:   3'- cAGAGGCAGGG--------------UCGGGgGcUCGCGGc -5'
15800 5' -64.5 NC_004065.1 + 158060 0.68 0.541035
Target:  5'- -cCUCCGggcugCCCGGCuCCaCCGgcGGCGUCGc -3'
miRNA:   3'- caGAGGCa----GGGUCG-GG-GGC--UCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 188334 0.68 0.541035
Target:  5'- cGUCUCCGcgUCCCucgcgaugcucAGCCCCagcgaggGGGCGCaCGu -3'
miRNA:   3'- -CAGAGGC--AGGG-----------UCGGGGg------CUCGCG-GC- -5'
15800 5' -64.5 NC_004065.1 + 28728 0.68 0.550185
Target:  5'- cUCUCCuccuccCCCGGCCgCCgGAGgGCCa -3'
miRNA:   3'- cAGAGGca----GGGUCGG-GGgCUCgCGGc -5'
15800 5' -64.5 NC_004065.1 + 197792 0.67 0.559383
Target:  5'- gGUgUCCGcguuggUCaCCAGCgCCCGcGGCGCCa -3'
miRNA:   3'- -CAgAGGC------AG-GGUCGgGGGC-UCGCGGc -5'
15800 5' -64.5 NC_004065.1 + 34438 0.67 0.568623
Target:  5'- ---gUCGaUCCCAGCCgucaCCCGAGCGUgGg -3'
miRNA:   3'- cagaGGC-AGGGUCGG----GGGCUCGCGgC- -5'
15800 5' -64.5 NC_004065.1 + 162505 0.67 0.596548
Target:  5'- aGUCUCCGaUCauGGCCCCgaagaaCGAcaGCGCCGa -3'
miRNA:   3'- -CAGAGGC-AGggUCGGGG------GCU--CGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 68214 0.67 0.596548
Target:  5'- cGUCcgUCCGUCCaugcgcccaucCAGCCCCCGGGUuaaaaagaaaGuCCGu -3'
miRNA:   3'- -CAG--AGGCAGG-----------GUCGGGGGCUCG----------C-GGC- -5'
15800 5' -64.5 NC_004065.1 + 168679 0.67 0.605908
Target:  5'- aUCUCCGUCUU--CgCCCGGGuCGCCGc -3'
miRNA:   3'- cAGAGGCAGGGucGgGGGCUC-GCGGC- -5'
15800 5' -64.5 NC_004065.1 + 27814 0.67 0.605908
Target:  5'- ---gUCG-CCCAGCCCuCCGAuGUGCCu -3'
miRNA:   3'- cagaGGCaGGGUCGGG-GGCU-CGCGGc -5'
15800 5' -64.5 NC_004065.1 + 125250 0.67 0.605908
Target:  5'- ---cCCGUCUCgaaGGCCgCCGGGuCGCCGu -3'
miRNA:   3'- cagaGGCAGGG---UCGGgGGCUC-GCGGC- -5'
15800 5' -64.5 NC_004065.1 + 188576 0.67 0.609656
Target:  5'- aGUCU-CGUCCCGGCCCaaaaggacguccaucUCGAGCcgGUCGu -3'
miRNA:   3'- -CAGAgGCAGGGUCGGG---------------GGCUCG--CGGC- -5'
15800 5' -64.5 NC_004065.1 + 99344 0.66 0.615284
Target:  5'- -cCUCCGccUCCUcGCCCgaCGAGCGuuGg -3'
miRNA:   3'- caGAGGC--AGGGuCGGGg-GCUCGCggC- -5'
15800 5' -64.5 NC_004065.1 + 29167 0.66 0.624671
Target:  5'- ---aCCG-CCCGcGCCCCCGucGaCGCCGa -3'
miRNA:   3'- cagaGGCaGGGU-CGGGGGCu-C-GCGGC- -5'
15800 5' -64.5 NC_004065.1 + 179171 0.66 0.624671
Target:  5'- cUCUCCGUCagAGgCCCCGcGC-CCGg -3'
miRNA:   3'- cAGAGGCAGggUCgGGGGCuCGcGGC- -5'
15800 5' -64.5 NC_004065.1 + 194419 0.66 0.634062
Target:  5'- ----gCGUUCCAGacggaguucUCCCCGGGCGCCu -3'
miRNA:   3'- cagagGCAGGGUC---------GGGGGCUCGCGGc -5'
15800 5' -64.5 NC_004065.1 + 18110 0.66 0.634062
Target:  5'- aUCUCUGUCgCGGaagaaCCUCCGGGCccGCCGc -3'
miRNA:   3'- cAGAGGCAGgGUC-----GGGGGCUCG--CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.