miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15800 5' -64.5 NC_004065.1 + 168679 0.67 0.605908
Target:  5'- aUCUCCGUCUU--CgCCCGGGuCGCCGc -3'
miRNA:   3'- cAGAGGCAGGGucGgGGGCUC-GCGGC- -5'
15800 5' -64.5 NC_004065.1 + 162505 0.67 0.596548
Target:  5'- aGUCUCCGaUCauGGCCCCgaagaaCGAcaGCGCCGa -3'
miRNA:   3'- -CAGAGGC-AGggUCGGGG------GCU--CGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 68214 0.67 0.596548
Target:  5'- cGUCcgUCCGUCCaugcgcccaucCAGCCCCCGGGUuaaaaagaaaGuCCGu -3'
miRNA:   3'- -CAG--AGGCAGG-----------GUCGGGGGCUCG----------C-GGC- -5'
15800 5' -64.5 NC_004065.1 + 34438 0.67 0.568623
Target:  5'- ---gUCGaUCCCAGCCgucaCCCGAGCGUgGg -3'
miRNA:   3'- cagaGGC-AGGGUCGG----GGGCUCGCGgC- -5'
15800 5' -64.5 NC_004065.1 + 197792 0.67 0.559383
Target:  5'- gGUgUCCGcguuggUCaCCAGCgCCCGcGGCGCCa -3'
miRNA:   3'- -CAgAGGC------AG-GGUCGgGGGC-UCGCGGc -5'
15800 5' -64.5 NC_004065.1 + 28728 0.68 0.550185
Target:  5'- cUCUCCuccuccCCCGGCCgCCgGAGgGCCa -3'
miRNA:   3'- cAGAGGca----GGGUCGG-GGgCUCgCGGc -5'
15800 5' -64.5 NC_004065.1 + 158060 0.68 0.541035
Target:  5'- -cCUCCGggcugCCCGGCuCCaCCGgcGGCGUCGc -3'
miRNA:   3'- caGAGGCa----GGGUCG-GG-GGC--UCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 188334 0.68 0.541035
Target:  5'- cGUCUCCGcgUCCCucgcgaugcucAGCCCCagcgaggGGGCGCaCGu -3'
miRNA:   3'- -CAGAGGC--AGGG-----------UCGGGGg------CUCGCG-GC- -5'
15800 5' -64.5 NC_004065.1 + 162830 0.68 0.529217
Target:  5'- aUCUCCGUCCCcagacgguacggguGGUCCgUcAGCGCCu -3'
miRNA:   3'- cAGAGGCAGGG--------------UCGGGgGcUCGCGGc -5'
15800 5' -64.5 NC_004065.1 + 147285 0.68 0.522893
Target:  5'- uUCUgCGccUUCCAGuCCCCCGAuugggGCGCCa -3'
miRNA:   3'- cAGAgGC--AGGGUC-GGGGGCU-----CGCGGc -5'
15800 5' -64.5 NC_004065.1 + 152600 0.68 0.51391
Target:  5'- cGUCgUCCGUCagCAGCgCCCGGGUcaccGCCa -3'
miRNA:   3'- -CAG-AGGCAGg-GUCGgGGGCUCG----CGGc -5'
15800 5' -64.5 NC_004065.1 + 160853 0.68 0.51391
Target:  5'- -aCUCCGUCgCCuucGCCUCCGccucguccAGCGUCGa -3'
miRNA:   3'- caGAGGCAG-GGu--CGGGGGC--------UCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 24498 0.68 0.50499
Target:  5'- ---aCCGcCgCCGG-CCCUGAGCGCCGg -3'
miRNA:   3'- cagaGGCaG-GGUCgGGGGCUCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 110488 0.68 0.496137
Target:  5'- cGUgUUCGcCCUGGCCCUCGAccacguccccGCGCCGc -3'
miRNA:   3'- -CAgAGGCaGGGUCGGGGGCU----------CGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 107407 0.69 0.478648
Target:  5'- cGUCUCCGUCUCGGacugggaCCUCGuGCuGCCc -3'
miRNA:   3'- -CAGAGGCAGGGUCg------GGGGCuCG-CGGc -5'
15800 5' -64.5 NC_004065.1 + 159340 0.69 0.478648
Target:  5'- uGUC-CaCGUCCaGGCCCUCGGGCaGCCu -3'
miRNA:   3'- -CAGaG-GCAGGgUCGGGGGCUCG-CGGc -5'
15800 5' -64.5 NC_004065.1 + 133360 0.69 0.478648
Target:  5'- -cCUCCGUCgggCgAGCCCgCCGA-CGCCGa -3'
miRNA:   3'- caGAGGCAG---GgUCGGG-GGCUcGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 159668 0.69 0.470018
Target:  5'- cGUCUCCGUCCUgGGCUCUCGAucucguuCGCCa -3'
miRNA:   3'- -CAGAGGCAGGG-UCGGGGGCUc------GCGGc -5'
15800 5' -64.5 NC_004065.1 + 153913 0.69 0.470018
Target:  5'- gGUCUCCcUCuCCuGCUauauaggcuuuCCCGAGCGCCu -3'
miRNA:   3'- -CAGAGGcAG-GGuCGG-----------GGGCUCGCGGc -5'
15800 5' -64.5 NC_004065.1 + 60169 0.69 0.461468
Target:  5'- cGUCaCCGUCCCcgaacccgucgcGGUUCCCGAGC-CCGu -3'
miRNA:   3'- -CAGaGGCAGGG------------UCGGGGGCUCGcGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.