miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15800 5' -64.5 NC_004065.1 + 3831 0.69 0.442121
Target:  5'- gGUCUCCGUggagCCCGcGCCCUCGuuaagcugggaagaAGCGUCGc -3'
miRNA:   3'- -CAGAGGCA----GGGU-CGGGGGC--------------UCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 17194 0.66 0.643452
Target:  5'- cGUCcUCGUCCCcaGGUCCCUugagcAGCGCCa -3'
miRNA:   3'- -CAGaGGCAGGG--UCGGGGGc----UCGCGGc -5'
15800 5' -64.5 NC_004065.1 + 18110 0.66 0.634062
Target:  5'- aUCUCUGUCgCGGaagaaCCUCCGGGCccGCCGc -3'
miRNA:   3'- cAGAGGCAGgGUC-----GGGGGCUCG--CGGC- -5'
15800 5' -64.5 NC_004065.1 + 20648 0.69 0.444618
Target:  5'- cGUCUCCGUCgCAGgCCUCGGaguacGCGUCu -3'
miRNA:   3'- -CAGAGGCAGgGUCgGGGGCU-----CGCGGc -5'
15800 5' -64.5 NC_004065.1 + 24498 0.68 0.50499
Target:  5'- ---aCCGcCgCCGG-CCCUGAGCGCCGg -3'
miRNA:   3'- cagaGGCaG-GGUCgGGGGCUCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 27814 0.67 0.605908
Target:  5'- ---gUCG-CCCAGCCCuCCGAuGUGCCu -3'
miRNA:   3'- cagaGGCaGGGUCGGG-GGCU-CGCGGc -5'
15800 5' -64.5 NC_004065.1 + 28728 0.68 0.550185
Target:  5'- cUCUCCuccuccCCCGGCCgCCgGAGgGCCa -3'
miRNA:   3'- cAGAGGca----GGGUCGG-GGgCUCgCGGc -5'
15800 5' -64.5 NC_004065.1 + 29167 0.66 0.624671
Target:  5'- ---aCCG-CCCGcGCCCCCGucGaCGCCGa -3'
miRNA:   3'- cagaGGCaGGGU-CGGGGGCu-C-GCGGC- -5'
15800 5' -64.5 NC_004065.1 + 31029 0.7 0.420006
Target:  5'- -cCUCgG-CCgCGGCCCugCCGAGCGCCa -3'
miRNA:   3'- caGAGgCaGG-GUCGGG--GGCUCGCGGc -5'
15800 5' -64.5 NC_004065.1 + 34438 0.67 0.568623
Target:  5'- ---gUCGaUCCCAGCCgucaCCCGAGCGUgGg -3'
miRNA:   3'- cagaGGC-AGGGUCGG----GGGCUCGCGgC- -5'
15800 5' -64.5 NC_004065.1 + 45105 0.77 0.166171
Target:  5'- cGUCUCCcggccgcUCCCgAGCCaCCCGGGCGCCc -3'
miRNA:   3'- -CAGAGGc------AGGG-UCGG-GGGCUCGCGGc -5'
15800 5' -64.5 NC_004065.1 + 45507 0.72 0.303119
Target:  5'- aUCUCCGUCCaCGucggacggucuacGCCaCCCG-GCGCCGc -3'
miRNA:   3'- cAGAGGCAGG-GU-------------CGG-GGGCuCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 60169 0.69 0.461468
Target:  5'- cGUCaCCGUCCCcgaacccgucgcGGUUCCCGAGC-CCGu -3'
miRNA:   3'- -CAGaGGCAGGG------------UCGGGGGCUCGcGGC- -5'
15800 5' -64.5 NC_004065.1 + 64481 0.66 0.634062
Target:  5'- -cCUCCGaUCCAGCCaCCCGuccccacGCGCUc -3'
miRNA:   3'- caGAGGCaGGGUCGG-GGGCu------CGCGGc -5'
15800 5' -64.5 NC_004065.1 + 65405 0.66 0.665946
Target:  5'- -cCUCCGaggcugcgagccucuUCCCcGCCUgCGAGCGgCGg -3'
miRNA:   3'- caGAGGC---------------AGGGuCGGGgGCUCGCgGC- -5'
15800 5' -64.5 NC_004065.1 + 67852 0.66 0.634062
Target:  5'- gGUCgUCCGaUCCCcgauCCUCCGAGgGCUGa -3'
miRNA:   3'- -CAG-AGGC-AGGGuc--GGGGGCUCgCGGC- -5'
15800 5' -64.5 NC_004065.1 + 68214 0.67 0.596548
Target:  5'- cGUCcgUCCGUCCaugcgcccaucCAGCCCCCGGGUuaaaaagaaaGuCCGu -3'
miRNA:   3'- -CAG--AGGCAGG-----------GUCGGGGGCUCG----------C-GGC- -5'
15800 5' -64.5 NC_004065.1 + 86726 0.77 0.154923
Target:  5'- -cCUCCuGcCCCGGCCCCCGA-CGCCGc -3'
miRNA:   3'- caGAGG-CaGGGUCGGGGGCUcGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 99344 0.66 0.615284
Target:  5'- -cCUCCGccUCCUcGCCCgaCGAGCGuuGg -3'
miRNA:   3'- caGAGGC--AGGGuCGGGg-GCUCGCggC- -5'
15800 5' -64.5 NC_004065.1 + 99998 0.69 0.461468
Target:  5'- cGUCUUCGUCgUAGCCgCCGc-CGCCGu -3'
miRNA:   3'- -CAGAGGCAGgGUCGGgGGCucGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.