miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15800 5' -64.5 NC_004065.1 + 102373 0.66 0.662204
Target:  5'- ---aUgGUCCCGccGCCCUCG-GCGCCGc -3'
miRNA:   3'- cagaGgCAGGGU--CGGGGGCuCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 107407 0.69 0.478648
Target:  5'- cGUCUCCGUCUCGGacugggaCCUCGuGCuGCCc -3'
miRNA:   3'- -CAGAGGCAGGGUCg------GGGGCuCG-CGGc -5'
15800 5' -64.5 NC_004065.1 + 110488 0.68 0.496137
Target:  5'- cGUgUUCGcCCUGGCCCUCGAccacguccccGCGCCGc -3'
miRNA:   3'- -CAgAGGCaGGGUCGGGGGCU----------CGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 112619 0.66 0.643452
Target:  5'- -aCUCCGcgCCgCgAGCCCagcgcgcgcggCCGAGCGUCGa -3'
miRNA:   3'- caGAGGCa-GG-G-UCGGG-----------GGCUCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 113874 0.7 0.420006
Target:  5'- -cCUaCCGaCCCGG-CCCCGAGCcGCCGc -3'
miRNA:   3'- caGA-GGCaGGGUCgGGGGCUCG-CGGC- -5'
15800 5' -64.5 NC_004065.1 + 116080 1.07 0.001219
Target:  5'- cGUCUCCGUCCCAGCCCCCGAGCGCCGc -3'
miRNA:   3'- -CAGAGGCAGGGUCGGGGGCUCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 123747 0.72 0.316843
Target:  5'- -cCUCCGgUCCAGCaCCUCGGuGCGCCGc -3'
miRNA:   3'- caGAGGCaGGGUCG-GGGGCU-CGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 125250 0.67 0.605908
Target:  5'- ---cCCGUCUCgaaGGCCgCCGGGuCGCCGu -3'
miRNA:   3'- cagaGGCAGGG---UCGGgGGCUC-GCGGC- -5'
15800 5' -64.5 NC_004065.1 + 133360 0.69 0.478648
Target:  5'- -cCUCCGUCgggCgAGCCCgCCGA-CGCCGa -3'
miRNA:   3'- caGAGGCAG---GgUCGGG-GGCUcGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 147285 0.68 0.522893
Target:  5'- uUCUgCGccUUCCAGuCCCCCGAuugggGCGCCa -3'
miRNA:   3'- cAGAgGC--AGGGUC-GGGGGCU-----CGCGGc -5'
15800 5' -64.5 NC_004065.1 + 152600 0.68 0.51391
Target:  5'- cGUCgUCCGUCagCAGCgCCCGGGUcaccGCCa -3'
miRNA:   3'- -CAG-AGGCAGg-GUCGgGGGCUCG----CGGc -5'
15800 5' -64.5 NC_004065.1 + 153182 0.66 0.634062
Target:  5'- cGUCagCGagggaUCCCAgGCCCUguacaucgCGAGCGCCGc -3'
miRNA:   3'- -CAGagGC-----AGGGU-CGGGG--------GCUCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 153913 0.69 0.470018
Target:  5'- gGUCUCCcUCuCCuGCUauauaggcuuuCCCGAGCGCCu -3'
miRNA:   3'- -CAGAGGcAG-GGuCGG-----------GGGCUCGCGGc -5'
15800 5' -64.5 NC_004065.1 + 158060 0.68 0.541035
Target:  5'- -cCUCCGggcugCCCGGCuCCaCCGgcGGCGUCGc -3'
miRNA:   3'- caGAGGCa----GGGUCG-GG-GGC--UCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 159340 0.69 0.478648
Target:  5'- uGUC-CaCGUCCaGGCCCUCGGGCaGCCu -3'
miRNA:   3'- -CAGaG-GCAGGgUCGGGGGCUCG-CGGc -5'
15800 5' -64.5 NC_004065.1 + 159668 0.69 0.470018
Target:  5'- cGUCUCCGUCCUgGGCUCUCGAucucguuCGCCa -3'
miRNA:   3'- -CAGAGGCAGGG-UCGGGGGCUc------GCGGc -5'
15800 5' -64.5 NC_004065.1 + 160853 0.68 0.51391
Target:  5'- -aCUCCGUCgCCuucGCCUCCGccucguccAGCGUCGa -3'
miRNA:   3'- caGAGGCAG-GGu--CGGGGGC--------UCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 162505 0.67 0.596548
Target:  5'- aGUCUCCGaUCauGGCCCCgaagaaCGAcaGCGCCGa -3'
miRNA:   3'- -CAGAGGC-AGggUCGGGG------GCU--CGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 162830 0.68 0.529217
Target:  5'- aUCUCCGUCCCcagacgguacggguGGUCCgUcAGCGCCu -3'
miRNA:   3'- cAGAGGCAGGG--------------UCGGGgGcUCGCGGc -5'
15800 5' -64.5 NC_004065.1 + 168679 0.67 0.605908
Target:  5'- aUCUCCGUCUU--CgCCCGGGuCGCCGc -3'
miRNA:   3'- cAGAGGCAGGGucGgGGGCUC-GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.