miRNA display CGI


Results 41 - 52 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15800 5' -64.5 NC_004065.1 + 179171 0.66 0.624671
Target:  5'- cUCUCCGUCagAGgCCCCGcGC-CCGg -3'
miRNA:   3'- cAGAGGCAGggUCgGGGGCuCGcGGC- -5'
15800 5' -64.5 NC_004065.1 + 186864 0.66 0.671552
Target:  5'- uGUCUgCCGUUCCcGCCgUCCGuGCGCg- -3'
miRNA:   3'- -CAGA-GGCAGGGuCGG-GGGCuCGCGgc -5'
15800 5' -64.5 NC_004065.1 + 188334 0.68 0.541035
Target:  5'- cGUCUCCGcgUCCCucgcgaugcucAGCCCCagcgaggGGGCGCaCGu -3'
miRNA:   3'- -CAGAGGC--AGGG-----------UCGGGGg------CUCGCG-GC- -5'
15800 5' -64.5 NC_004065.1 + 188538 0.66 0.671552
Target:  5'- cUCcCCGUCCCGaCgCCCCG-GCGCaCGc -3'
miRNA:   3'- cAGaGGCAGGGUcG-GGGGCuCGCG-GC- -5'
15800 5' -64.5 NC_004065.1 + 188576 0.67 0.609656
Target:  5'- aGUCU-CGUCCCGGCCCaaaaggacguccaucUCGAGCcgGUCGu -3'
miRNA:   3'- -CAGAgGCAGGGUCGGG---------------GGCUCG--CGGC- -5'
15800 5' -64.5 NC_004065.1 + 194419 0.66 0.634062
Target:  5'- ----gCGUUCCAGacggaguucUCCCCGGGCGCCu -3'
miRNA:   3'- cagagGCAGGGUC---------GGGGGCUCGCGGc -5'
15800 5' -64.5 NC_004065.1 + 197792 0.67 0.559383
Target:  5'- gGUgUCCGcguuggUCaCCAGCgCCCGcGGCGCCa -3'
miRNA:   3'- -CAgAGGC------AG-GGUCGgGGGC-UCGCGGc -5'
15800 5' -64.5 NC_004065.1 + 198905 0.66 0.643452
Target:  5'- uUC-CCGU-CCAGCCuCUCGAucgcGCGCCGc -3'
miRNA:   3'- cAGaGGCAgGGUCGG-GGGCU----CGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 199954 0.66 0.652835
Target:  5'- -gCUCCG-CCacggCGGUCCCgucucugggauCGAGCGCCGa -3'
miRNA:   3'- caGAGGCaGG----GUCGGGG-----------GCUCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 200610 0.69 0.461468
Target:  5'- uUCUCCcugCCCuGGCCCaCCG-GCGCCu -3'
miRNA:   3'- cAGAGGca-GGG-UCGGG-GGCuCGCGGc -5'
15800 5' -64.5 NC_004065.1 + 202736 0.72 0.337253
Target:  5'- ---gCCGUUUCGGCUcguguCCCGAGCGCCGu -3'
miRNA:   3'- cagaGGCAGGGUCGG-----GGGCUCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 205168 0.66 0.634062
Target:  5'- cGUCgaggccgCCGUCgCC-GCCaacaUCGGGCGCCGc -3'
miRNA:   3'- -CAGa------GGCAG-GGuCGGg---GGCUCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.