Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15800 | 5' | -64.5 | NC_004065.1 | + | 153182 | 0.66 | 0.634062 |
Target: 5'- cGUCagCGagggaUCCCAgGCCCUguacaucgCGAGCGCCGc -3' miRNA: 3'- -CAGagGC-----AGGGU-CGGGG--------GCUCGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 152600 | 0.68 | 0.51391 |
Target: 5'- cGUCgUCCGUCagCAGCgCCCGGGUcaccGCCa -3' miRNA: 3'- -CAG-AGGCAGg-GUCGgGGGCUCG----CGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 147285 | 0.68 | 0.522893 |
Target: 5'- uUCUgCGccUUCCAGuCCCCCGAuugggGCGCCa -3' miRNA: 3'- cAGAgGC--AGGGUC-GGGGGCU-----CGCGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 133360 | 0.69 | 0.478648 |
Target: 5'- -cCUCCGUCgggCgAGCCCgCCGA-CGCCGa -3' miRNA: 3'- caGAGGCAG---GgUCGGG-GGCUcGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 125250 | 0.67 | 0.605908 |
Target: 5'- ---cCCGUCUCgaaGGCCgCCGGGuCGCCGu -3' miRNA: 3'- cagaGGCAGGG---UCGGgGGCUC-GCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 123747 | 0.72 | 0.316843 |
Target: 5'- -cCUCCGgUCCAGCaCCUCGGuGCGCCGc -3' miRNA: 3'- caGAGGCaGGGUCG-GGGGCU-CGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 116080 | 1.07 | 0.001219 |
Target: 5'- cGUCUCCGUCCCAGCCCCCGAGCGCCGc -3' miRNA: 3'- -CAGAGGCAGGGUCGGGGGCUCGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 113874 | 0.7 | 0.420006 |
Target: 5'- -cCUaCCGaCCCGG-CCCCGAGCcGCCGc -3' miRNA: 3'- caGA-GGCaGGGUCgGGGGCUCG-CGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 112619 | 0.66 | 0.643452 |
Target: 5'- -aCUCCGcgCCgCgAGCCCagcgcgcgcggCCGAGCGUCGa -3' miRNA: 3'- caGAGGCa-GG-G-UCGGG-----------GGCUCGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 110488 | 0.68 | 0.496137 |
Target: 5'- cGUgUUCGcCCUGGCCCUCGAccacguccccGCGCCGc -3' miRNA: 3'- -CAgAGGCaGGGUCGGGGGCU----------CGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 107407 | 0.69 | 0.478648 |
Target: 5'- cGUCUCCGUCUCGGacugggaCCUCGuGCuGCCc -3' miRNA: 3'- -CAGAGGCAGGGUCg------GGGGCuCG-CGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 102373 | 0.66 | 0.662204 |
Target: 5'- ---aUgGUCCCGccGCCCUCG-GCGCCGc -3' miRNA: 3'- cagaGgCAGGGU--CGGGGGCuCGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 99998 | 0.69 | 0.461468 |
Target: 5'- cGUCUUCGUCgUAGCCgCCGc-CGCCGu -3' miRNA: 3'- -CAGAGGCAGgGUCGGgGGCucGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 99344 | 0.66 | 0.615284 |
Target: 5'- -cCUCCGccUCCUcGCCCgaCGAGCGuuGg -3' miRNA: 3'- caGAGGC--AGGGuCGGGg-GCUCGCggC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 86726 | 0.77 | 0.154923 |
Target: 5'- -cCUCCuGcCCCGGCCCCCGA-CGCCGc -3' miRNA: 3'- caGAGG-CaGGGUCGGGGGCUcGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 68214 | 0.67 | 0.596548 |
Target: 5'- cGUCcgUCCGUCCaugcgcccaucCAGCCCCCGGGUuaaaaagaaaGuCCGu -3' miRNA: 3'- -CAG--AGGCAGG-----------GUCGGGGGCUCG----------C-GGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 67852 | 0.66 | 0.634062 |
Target: 5'- gGUCgUCCGaUCCCcgauCCUCCGAGgGCUGa -3' miRNA: 3'- -CAG-AGGC-AGGGuc--GGGGGCUCgCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 65405 | 0.66 | 0.665946 |
Target: 5'- -cCUCCGaggcugcgagccucuUCCCcGCCUgCGAGCGgCGg -3' miRNA: 3'- caGAGGC---------------AGGGuCGGGgGCUCGCgGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 64481 | 0.66 | 0.634062 |
Target: 5'- -cCUCCGaUCCAGCCaCCCGuccccacGCGCUc -3' miRNA: 3'- caGAGGCaGGGUCGG-GGGCu------CGCGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 60169 | 0.69 | 0.461468 |
Target: 5'- cGUCaCCGUCCCcgaacccgucgcGGUUCCCGAGC-CCGu -3' miRNA: 3'- -CAGaGGCAGGG------------UCGGGGGCUCGcGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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