Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15800 | 5' | -64.5 | NC_004065.1 | + | 86726 | 0.77 | 0.154923 |
Target: 5'- -cCUCCuGcCCCGGCCCCCGA-CGCCGc -3' miRNA: 3'- caGAGG-CaGGGUCGGGGGCUcGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 27814 | 0.67 | 0.605908 |
Target: 5'- ---gUCG-CCCAGCCCuCCGAuGUGCCu -3' miRNA: 3'- cagaGGCaGGGUCGGG-GGCU-CGCGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 125250 | 0.67 | 0.605908 |
Target: 5'- ---cCCGUCUCgaaGGCCgCCGGGuCGCCGu -3' miRNA: 3'- cagaGGCAGGG---UCGGgGGCUC-GCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 99344 | 0.66 | 0.615284 |
Target: 5'- -cCUCCGccUCCUcGCCCgaCGAGCGuuGg -3' miRNA: 3'- caGAGGC--AGGGuCGGGg-GCUCGCggC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 194419 | 0.66 | 0.634062 |
Target: 5'- ----gCGUUCCAGacggaguucUCCCCGGGCGCCu -3' miRNA: 3'- cagagGCAGGGUC---------GGGGGCUCGCGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 18110 | 0.66 | 0.634062 |
Target: 5'- aUCUCUGUCgCGGaagaaCCUCCGGGCccGCCGc -3' miRNA: 3'- cAGAGGCAGgGUC-----GGGGGCUCG--CGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 17194 | 0.66 | 0.643452 |
Target: 5'- cGUCcUCGUCCCcaGGUCCCUugagcAGCGCCa -3' miRNA: 3'- -CAGaGGCAGGG--UCGGGGGc----UCGCGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 198905 | 0.66 | 0.643452 |
Target: 5'- uUC-CCGU-CCAGCCuCUCGAucgcGCGCCGc -3' miRNA: 3'- cAGaGGCAgGGUCGG-GGGCU----CGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 199954 | 0.66 | 0.652835 |
Target: 5'- -gCUCCG-CCacggCGGUCCCgucucugggauCGAGCGCCGa -3' miRNA: 3'- caGAGGCaGG----GUCGGGG-----------GCUCGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 34438 | 0.67 | 0.568623 |
Target: 5'- ---gUCGaUCCCAGCCgucaCCCGAGCGUgGg -3' miRNA: 3'- cagaGGC-AGGGUCGG----GGGCUCGCGgC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 197792 | 0.67 | 0.559383 |
Target: 5'- gGUgUCCGcguuggUCaCCAGCgCCCGcGGCGCCa -3' miRNA: 3'- -CAgAGGC------AG-GGUCGgGGGC-UCGCGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 28728 | 0.68 | 0.550185 |
Target: 5'- cUCUCCuccuccCCCGGCCgCCgGAGgGCCa -3' miRNA: 3'- cAGAGGca----GGGUCGG-GGgCUCgCGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 45507 | 0.72 | 0.303119 |
Target: 5'- aUCUCCGUCCaCGucggacggucuacGCCaCCCG-GCGCCGc -3' miRNA: 3'- cAGAGGCAGG-GU-------------CGG-GGGCuCGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 123747 | 0.72 | 0.316843 |
Target: 5'- -cCUCCGgUCCAGCaCCUCGGuGCGCCGc -3' miRNA: 3'- caGAGGCaGGGUCG-GGGGCU-CGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 202736 | 0.72 | 0.337253 |
Target: 5'- ---gCCGUUUCGGCUcguguCCCGAGCGCCGu -3' miRNA: 3'- cagaGGCAGGGUCGG-----GGGCUCGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 31029 | 0.7 | 0.420006 |
Target: 5'- -cCUCgG-CCgCGGCCCugCCGAGCGCCa -3' miRNA: 3'- caGAGgCaGG-GUCGGG--GGCUCGCGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 20648 | 0.69 | 0.444618 |
Target: 5'- cGUCUCCGUCgCAGgCCUCGGaguacGCGUCu -3' miRNA: 3'- -CAGAGGCAGgGUCgGGGGCU-----CGCGGc -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 99998 | 0.69 | 0.461468 |
Target: 5'- cGUCUUCGUCgUAGCCgCCGc-CGCCGu -3' miRNA: 3'- -CAGAGGCAGgGUCGGgGGCucGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 24498 | 0.68 | 0.50499 |
Target: 5'- ---aCCGcCgCCGG-CCCUGAGCGCCGg -3' miRNA: 3'- cagaGGCaG-GGUCgGGGGCUCGCGGC- -5' |
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15800 | 5' | -64.5 | NC_004065.1 | + | 147285 | 0.68 | 0.522893 |
Target: 5'- uUCUgCGccUUCCAGuCCCCCGAuugggGCGCCa -3' miRNA: 3'- cAGAgGC--AGGGUC-GGGGGCU-----CGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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