miRNA display CGI


Results 41 - 52 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15800 5' -64.5 NC_004065.1 + 28728 0.68 0.550185
Target:  5'- cUCUCCuccuccCCCGGCCgCCgGAGgGCCa -3'
miRNA:   3'- cAGAGGca----GGGUCGG-GGgCUCgCGGc -5'
15800 5' -64.5 NC_004065.1 + 197792 0.67 0.559383
Target:  5'- gGUgUCCGcguuggUCaCCAGCgCCCGcGGCGCCa -3'
miRNA:   3'- -CAgAGGC------AG-GGUCGgGGGC-UCGCGGc -5'
15800 5' -64.5 NC_004065.1 + 199954 0.66 0.652835
Target:  5'- -gCUCCG-CCacggCGGUCCCgucucugggauCGAGCGCCGa -3'
miRNA:   3'- caGAGGCaGG----GUCGGGG-----------GCUCGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 198905 0.66 0.643452
Target:  5'- uUC-CCGU-CCAGCCuCUCGAucgcGCGCCGc -3'
miRNA:   3'- cAGaGGCAgGGUCGG-GGGCU----CGCGGC- -5'
15800 5' -64.5 NC_004065.1 + 17194 0.66 0.643452
Target:  5'- cGUCcUCGUCCCcaGGUCCCUugagcAGCGCCa -3'
miRNA:   3'- -CAGaGGCAGGG--UCGGGGGc----UCGCGGc -5'
15800 5' -64.5 NC_004065.1 + 18110 0.66 0.634062
Target:  5'- aUCUCUGUCgCGGaagaaCCUCCGGGCccGCCGc -3'
miRNA:   3'- cAGAGGCAGgGUC-----GGGGGCUCG--CGGC- -5'
15800 5' -64.5 NC_004065.1 + 194419 0.66 0.634062
Target:  5'- ----gCGUUCCAGacggaguucUCCCCGGGCGCCu -3'
miRNA:   3'- cagagGCAGGGUC---------GGGGGCUCGCGGc -5'
15800 5' -64.5 NC_004065.1 + 99344 0.66 0.615284
Target:  5'- -cCUCCGccUCCUcGCCCgaCGAGCGuuGg -3'
miRNA:   3'- caGAGGC--AGGGuCGGGg-GCUCGCggC- -5'
15800 5' -64.5 NC_004065.1 + 125250 0.67 0.605908
Target:  5'- ---cCCGUCUCgaaGGCCgCCGGGuCGCCGu -3'
miRNA:   3'- cagaGGCAGGG---UCGGgGGCUC-GCGGC- -5'
15800 5' -64.5 NC_004065.1 + 27814 0.67 0.605908
Target:  5'- ---gUCG-CCCAGCCCuCCGAuGUGCCu -3'
miRNA:   3'- cagaGGCaGGGUCGGG-GGCU-CGCGGc -5'
15800 5' -64.5 NC_004065.1 + 34438 0.67 0.568623
Target:  5'- ---gUCGaUCCCAGCCgucaCCCGAGCGUgGg -3'
miRNA:   3'- cagaGGC-AGGGUCGG----GGGCUCGCGgC- -5'
15800 5' -64.5 NC_004065.1 + 86726 0.77 0.154923
Target:  5'- -cCUCCuGcCCCGGCCCCCGA-CGCCGc -3'
miRNA:   3'- caGAGG-CaGGGUCGGGGGCUcGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.