miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15802 5' -53.8 NC_004065.1 + 81960 0.66 0.990194
Target:  5'- -aCGCaggaGAUCUGGAUGAUGaUGUCgUCg -3'
miRNA:   3'- caGCG----CUAGGCCUACUACcAUAGgGG- -5'
15802 5' -53.8 NC_004065.1 + 83341 0.66 0.990194
Target:  5'- -aCGcCGAUCaccaggaGGAUGGUGGUGaaacCUCCa -3'
miRNA:   3'- caGC-GCUAGg------CCUACUACCAUa---GGGG- -5'
15802 5' -53.8 NC_004065.1 + 174298 0.66 0.988897
Target:  5'- -aCGCGGcCaguaGGAUGAUcaGG-GUCCCCg -3'
miRNA:   3'- caGCGCUaGg---CCUACUA--CCaUAGGGG- -5'
15802 5' -53.8 NC_004065.1 + 206652 0.66 0.988897
Target:  5'- uUUGUcuGUCCGGAgaggGGUGGUGUCgcuugaCCCg -3'
miRNA:   3'- cAGCGc-UAGGCCUa---CUACCAUAG------GGG- -5'
15802 5' -53.8 NC_004065.1 + 98125 0.66 0.988897
Target:  5'- aGUCGCGGaugUCCGGAgaggucUGgcGGUgauaGUCgCCg -3'
miRNA:   3'- -CAGCGCU---AGGCCU------ACuaCCA----UAGgGG- -5'
15802 5' -53.8 NC_004065.1 + 180460 0.66 0.987471
Target:  5'- cGUCGCGAUgcaCGGcuacGUGGccGGcgAUCCCCu -3'
miRNA:   3'- -CAGCGCUAg--GCC----UACUa-CCa-UAGGGG- -5'
15802 5' -53.8 NC_004065.1 + 73985 0.67 0.982336
Target:  5'- cGUCGCGGUCCaGGca---GGUcUCCCUg -3'
miRNA:   3'- -CAGCGCUAGG-CCuacuaCCAuAGGGG- -5'
15802 5' -53.8 NC_004065.1 + 40315 0.67 0.982141
Target:  5'- uUUGCGAUgCCGGugucgucGUGGaGGgacAUCCCCg -3'
miRNA:   3'- cAGCGCUA-GGCC-------UACUaCCa--UAGGGG- -5'
15802 5' -53.8 NC_004065.1 + 156190 0.67 0.980314
Target:  5'- aUCGUGAgugaGGAUGccgaaucuGUGGuUGUCCCCu -3'
miRNA:   3'- cAGCGCUagg-CCUAC--------UACC-AUAGGGG- -5'
15802 5' -53.8 NC_004065.1 + 1820 0.67 0.975759
Target:  5'- aUCGCGGUucCCGuGGUGAcggugaucguguUGGUGUCCg- -3'
miRNA:   3'- cAGCGCUA--GGC-CUACU------------ACCAUAGGgg -5'
15802 5' -53.8 NC_004065.1 + 136636 0.67 0.973213
Target:  5'- --gGCGGUCCGGAgcgGcGUGG-AUCCUg -3'
miRNA:   3'- cagCGCUAGGCCUa--C-UACCaUAGGGg -5'
15802 5' -53.8 NC_004065.1 + 77831 0.67 0.973213
Target:  5'- cUUGCGGaaccaggcUCCGGAcgcgGcGUGGgcUCCCCg -3'
miRNA:   3'- cAGCGCU--------AGGCCUa---C-UACCauAGGGG- -5'
15802 5' -53.8 NC_004065.1 + 126119 0.68 0.970478
Target:  5'- cGUCGCGAccUCCGccucgcgaGAUGAUG--AUCUCCa -3'
miRNA:   3'- -CAGCGCU--AGGC--------CUACUACcaUAGGGG- -5'
15802 5' -53.8 NC_004065.1 + 213008 0.68 0.964419
Target:  5'- gGUCGUGGUCgGGAUGGaugucuuagacGGUGUgcUCCCg -3'
miRNA:   3'- -CAGCGCUAGgCCUACUa----------CCAUA--GGGG- -5'
15802 5' -53.8 NC_004065.1 + 122449 0.68 0.961084
Target:  5'- aUCGUGAUCuCGGGcagggucagGGUGGcGUCCCg -3'
miRNA:   3'- cAGCGCUAG-GCCUa--------CUACCaUAGGGg -5'
15802 5' -53.8 NC_004065.1 + 201427 0.68 0.957173
Target:  5'- gGUCGUGGggaucugUCUGGAaGAcgagGGUGUCCCg -3'
miRNA:   3'- -CAGCGCU-------AGGCCUaCUa---CCAUAGGGg -5'
15802 5' -53.8 NC_004065.1 + 104302 0.69 0.949802
Target:  5'- uUCGCcuccAUCUGGAUGAUGGUGaaCgCCa -3'
miRNA:   3'- cAGCGc---UAGGCCUACUACCAUagG-GG- -5'
15802 5' -53.8 NC_004065.1 + 103242 0.69 0.949802
Target:  5'- cUCGCGAcagacgaCGG-UGAUGGUGUCCa- -3'
miRNA:   3'- cAGCGCUag-----GCCuACUACCAUAGGgg -5'
15802 5' -53.8 NC_004065.1 + 110312 0.69 0.945602
Target:  5'- uGUCGCGAcgaGGGcaUGAUGGUA-CCCUu -3'
miRNA:   3'- -CAGCGCUaggCCU--ACUACCAUaGGGG- -5'
15802 5' -53.8 NC_004065.1 + 78454 0.69 0.945602
Target:  5'- -aCGaCGGUCgaGGAUGAUGaUGUCUCCg -3'
miRNA:   3'- caGC-GCUAGg-CCUACUACcAUAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.