Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15802 | 5' | -53.8 | NC_004065.1 | + | 1820 | 0.67 | 0.975759 |
Target: 5'- aUCGCGGUucCCGuGGUGAcggugaucguguUGGUGUCCg- -3' miRNA: 3'- cAGCGCUA--GGC-CUACU------------ACCAUAGGgg -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 156190 | 0.67 | 0.980314 |
Target: 5'- aUCGUGAgugaGGAUGccgaaucuGUGGuUGUCCCCu -3' miRNA: 3'- cAGCGCUagg-CCUAC--------UACC-AUAGGGG- -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 40315 | 0.67 | 0.982141 |
Target: 5'- uUUGCGAUgCCGGugucgucGUGGaGGgacAUCCCCg -3' miRNA: 3'- cAGCGCUA-GGCC-------UACUaCCa--UAGGGG- -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 73985 | 0.67 | 0.982336 |
Target: 5'- cGUCGCGGUCCaGGca---GGUcUCCCUg -3' miRNA: 3'- -CAGCGCUAGG-CCuacuaCCAuAGGGG- -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 180460 | 0.66 | 0.987471 |
Target: 5'- cGUCGCGAUgcaCGGcuacGUGGccGGcgAUCCCCu -3' miRNA: 3'- -CAGCGCUAg--GCC----UACUa-CCa-UAGGGG- -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 206652 | 0.66 | 0.988897 |
Target: 5'- uUUGUcuGUCCGGAgaggGGUGGUGUCgcuugaCCCg -3' miRNA: 3'- cAGCGc-UAGGCCUa---CUACCAUAG------GGG- -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 174298 | 0.66 | 0.988897 |
Target: 5'- -aCGCGGcCaguaGGAUGAUcaGG-GUCCCCg -3' miRNA: 3'- caGCGCUaGg---CCUACUA--CCaUAGGGG- -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 98125 | 0.66 | 0.988897 |
Target: 5'- aGUCGCGGaugUCCGGAgaggucUGgcGGUgauaGUCgCCg -3' miRNA: 3'- -CAGCGCU---AGGCCU------ACuaCCA----UAGgGG- -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 83341 | 0.66 | 0.990194 |
Target: 5'- -aCGcCGAUCaccaggaGGAUGGUGGUGaaacCUCCa -3' miRNA: 3'- caGC-GCUAGg------CCUACUACCAUa---GGGG- -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 81960 | 0.66 | 0.990194 |
Target: 5'- -aCGCaggaGAUCUGGAUGAUGaUGUCgUCg -3' miRNA: 3'- caGCG----CUAGGCCUACUACcAUAGgGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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