Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 15802 | 5' | -53.8 | NC_004065.1 | + | 113264 | 0.69 | 0.93165 |
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Target: 5'- --gGCGAUCuCGGAcccGAUGGUAcgCCUCg -3' miRNA: 3'- cagCGCUAG-GCCUa--CUACCAUa-GGGG- -5' |
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| 15802 | 5' | -53.8 | NC_004065.1 | + | 31167 | 0.7 | 0.915643 |
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Target: 5'- -cCGCGG-CCGGAgcuaGcAUGGUcugGUCCCCu -3' miRNA: 3'- caGCGCUaGGCCUa---C-UACCA---UAGGGG- -5' |
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| 15802 | 5' | -53.8 | NC_004065.1 | + | 72613 | 0.7 | 0.903833 |
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Target: 5'- uUCGCGAUCCcGAUGAcGGUGggcaUCCa -3' miRNA: 3'- cAGCGCUAGGcCUACUaCCAUag--GGG- -5' |
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| 15802 | 5' | -53.8 | NC_004065.1 | + | 111179 | 0.71 | 0.877552 |
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Target: 5'- uGUCGCGGUCgUGGAUGAcGGUGgaaaCCa -3' miRNA: 3'- -CAGCGCUAG-GCCUACUaCCAUagg-GG- -5' |
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| 15802 | 5' | -53.8 | NC_004065.1 | + | 121523 | 0.71 | 0.870448 |
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Target: 5'- gGUgGUuGUCCGGGUGccGGUAcaucuUCCCCa -3' miRNA: 3'- -CAgCGcUAGGCCUACuaCCAU-----AGGGG- -5' |
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| 15802 | 5' | -53.8 | NC_004065.1 | + | 8339 | 0.73 | 0.789154 |
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Target: 5'- aUCGCGAUCCGGcgGUGAcaaagagagacUGG-GUCCCg -3' miRNA: 3'- cAGCGCUAGGCC--UACU-----------ACCaUAGGGg -5' |
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| 15802 | 5' | -53.8 | NC_004065.1 | + | 115500 | 0.75 | 0.704289 |
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Target: 5'- --gGCG-UCCGGGUGAUGauagggaggaccGUAUCCCCc -3' miRNA: 3'- cagCGCuAGGCCUACUAC------------CAUAGGGG- -5' |
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| 15802 | 5' | -53.8 | NC_004065.1 | + | 71001 | 0.75 | 0.684568 |
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Target: 5'- -cCGCGAcccgaggucUCUGGAggGAUGGUAauUCCCCu -3' miRNA: 3'- caGCGCU---------AGGCCUa-CUACCAU--AGGGG- -5' |
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| 15802 | 5' | -53.8 | NC_004065.1 | + | 139889 | 0.77 | 0.604661 |
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Target: 5'- --gGUGGUCCGGGUGAgGGUgaucgcAUCCCCc -3' miRNA: 3'- cagCGCUAGGCCUACUaCCA------UAGGGG- -5' |
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| 15802 | 5' | -53.8 | NC_004065.1 | + | 115466 | 1.11 | 0.006178 |
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Target: 5'- gGUCGCGAUCCGGAUGAUGGUAUCCCCc -3' miRNA: 3'- -CAGCGCUAGGCCUACUACCAUAGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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