Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15802 | 5' | -53.8 | NC_004065.1 | + | 213008 | 0.68 | 0.964419 |
Target: 5'- gGUCGUGGUCgGGAUGGaugucuuagacGGUGUgcUCCCg -3' miRNA: 3'- -CAGCGCUAGgCCUACUa----------CCAUA--GGGG- -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 206652 | 0.66 | 0.988897 |
Target: 5'- uUUGUcuGUCCGGAgaggGGUGGUGUCgcuugaCCCg -3' miRNA: 3'- cAGCGc-UAGGCCUa---CUACCAUAG------GGG- -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 201427 | 0.68 | 0.957173 |
Target: 5'- gGUCGUGGggaucugUCUGGAaGAcgagGGUGUCCCg -3' miRNA: 3'- -CAGCGCU-------AGGCCUaCUa---CCAUAGGGg -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 180460 | 0.66 | 0.987471 |
Target: 5'- cGUCGCGAUgcaCGGcuacGUGGccGGcgAUCCCCu -3' miRNA: 3'- -CAGCGCUAg--GCC----UACUa-CCa-UAGGGG- -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 174298 | 0.66 | 0.988897 |
Target: 5'- -aCGCGGcCaguaGGAUGAUcaGG-GUCCCCg -3' miRNA: 3'- caGCGCUaGg---CCUACUA--CCaUAGGGG- -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 156190 | 0.67 | 0.980314 |
Target: 5'- aUCGUGAgugaGGAUGccgaaucuGUGGuUGUCCCCu -3' miRNA: 3'- cAGCGCUagg-CCUAC--------UACC-AUAGGGG- -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 139889 | 0.77 | 0.604661 |
Target: 5'- --gGUGGUCCGGGUGAgGGUgaucgcAUCCCCc -3' miRNA: 3'- cagCGCUAGGCCUACUaCCA------UAGGGG- -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 136636 | 0.67 | 0.973213 |
Target: 5'- --gGCGGUCCGGAgcgGcGUGG-AUCCUg -3' miRNA: 3'- cagCGCUAGGCCUa--C-UACCaUAGGGg -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 126119 | 0.68 | 0.970478 |
Target: 5'- cGUCGCGAccUCCGccucgcgaGAUGAUG--AUCUCCa -3' miRNA: 3'- -CAGCGCU--AGGC--------CUACUACcaUAGGGG- -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 122449 | 0.68 | 0.961084 |
Target: 5'- aUCGUGAUCuCGGGcagggucagGGUGGcGUCCCg -3' miRNA: 3'- cAGCGCUAG-GCCUa--------CUACCaUAGGGg -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 121523 | 0.71 | 0.870448 |
Target: 5'- gGUgGUuGUCCGGGUGccGGUAcaucuUCCCCa -3' miRNA: 3'- -CAgCGcUAGGCCUACuaCCAU-----AGGGG- -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 115500 | 0.75 | 0.704289 |
Target: 5'- --gGCG-UCCGGGUGAUGauagggaggaccGUAUCCCCc -3' miRNA: 3'- cagCGCuAGGCCUACUAC------------CAUAGGGG- -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 115466 | 1.11 | 0.006178 |
Target: 5'- gGUCGCGAUCCGGAUGAUGGUAUCCCCc -3' miRNA: 3'- -CAGCGCUAGGCCUACUACCAUAGGGG- -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 113264 | 0.69 | 0.93165 |
Target: 5'- --gGCGAUCuCGGAcccGAUGGUAcgCCUCg -3' miRNA: 3'- cagCGCUAG-GCCUa--CUACCAUa-GGGG- -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 111179 | 0.71 | 0.877552 |
Target: 5'- uGUCGCGGUCgUGGAUGAcGGUGgaaaCCa -3' miRNA: 3'- -CAGCGCUAG-GCCUACUaCCAUagg-GG- -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 110312 | 0.69 | 0.945602 |
Target: 5'- uGUCGCGAcgaGGGcaUGAUGGUA-CCCUu -3' miRNA: 3'- -CAGCGCUaggCCU--ACUACCAUaGGGG- -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 104302 | 0.69 | 0.949802 |
Target: 5'- uUCGCcuccAUCUGGAUGAUGGUGaaCgCCa -3' miRNA: 3'- cAGCGc---UAGGCCUACUACCAUagG-GG- -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 103242 | 0.69 | 0.949802 |
Target: 5'- cUCGCGAcagacgaCGG-UGAUGGUGUCCa- -3' miRNA: 3'- cAGCGCUag-----GCCuACUACCAUAGGgg -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 98125 | 0.66 | 0.988897 |
Target: 5'- aGUCGCGGaugUCCGGAgaggucUGgcGGUgauaGUCgCCg -3' miRNA: 3'- -CAGCGCU---AGGCCU------ACuaCCA----UAGgGG- -5' |
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15802 | 5' | -53.8 | NC_004065.1 | + | 83341 | 0.66 | 0.990194 |
Target: 5'- -aCGcCGAUCaccaggaGGAUGGUGGUGaaacCUCCa -3' miRNA: 3'- caGC-GCUAGg------CCUACUACCAUa---GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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