miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15804 3' -52.4 NC_004065.1 + 33113 0.66 0.993632
Target:  5'- aGCccagaUCGAUGUCcaUGCAgUCgACGGCCGUGa -3'
miRNA:   3'- gCG-----AGUUGUAG--ACGU-AG-UGCCGGUAC- -5'
15804 3' -52.4 NC_004065.1 + 28414 0.66 0.993632
Target:  5'- uCGUacgUCAAgUAUCUGaucaaGUgCGCGGCCAUGg -3'
miRNA:   3'- -GCG---AGUU-GUAGACg----UA-GUGCCGGUAC- -5'
15804 3' -52.4 NC_004065.1 + 6910 0.66 0.993632
Target:  5'- aCGCggCGGCuucagCUGCGggCACGGCCu-- -3'
miRNA:   3'- -GCGa-GUUGua---GACGUa-GUGCCGGuac -5'
15804 3' -52.4 NC_004065.1 + 177477 0.66 0.992678
Target:  5'- gCGCUCGGCGgggGCG-CACGGCgGg- -3'
miRNA:   3'- -GCGAGUUGUagaCGUaGUGCCGgUac -5'
15804 3' -52.4 NC_004065.1 + 110982 0.66 0.992678
Target:  5'- gGgUCAgaGCGUCgUGUugacgagCACGGCCAUGu -3'
miRNA:   3'- gCgAGU--UGUAG-ACGua-----GUGCCGGUAC- -5'
15804 3' -52.4 NC_004065.1 + 125849 0.66 0.991614
Target:  5'- aCGgUCGugGgcagCUGguUCuCGGCCGUGu -3'
miRNA:   3'- -GCgAGUugUa---GACguAGuGCCGGUAC- -5'
15804 3' -52.4 NC_004065.1 + 146942 0.66 0.991614
Target:  5'- gCGCUCucucgaaaacuACAUCUGCAa-GCGcGUCAUGg -3'
miRNA:   3'- -GCGAGu----------UGUAGACGUagUGC-CGGUAC- -5'
15804 3' -52.4 NC_004065.1 + 142738 0.66 0.991614
Target:  5'- uCGCUCGACuUCUGUA--GCGGUCu-- -3'
miRNA:   3'- -GCGAGUUGuAGACGUagUGCCGGuac -5'
15804 3' -52.4 NC_004065.1 + 57221 0.66 0.991614
Target:  5'- gGCUUAACGcaugguuuauucUCUGCuUCACuGUCAUGa -3'
miRNA:   3'- gCGAGUUGU------------AGACGuAGUGcCGGUAC- -5'
15804 3' -52.4 NC_004065.1 + 166029 0.66 0.991614
Target:  5'- gGCcgUCAcCGUCUGCAguugCACGGCgGa- -3'
miRNA:   3'- gCG--AGUuGUAGACGUa---GUGCCGgUac -5'
15804 3' -52.4 NC_004065.1 + 171325 0.66 0.990432
Target:  5'- gCGC-CAAgGUCUGCAUguCGGCg--- -3'
miRNA:   3'- -GCGaGUUgUAGACGUAguGCCGguac -5'
15804 3' -52.4 NC_004065.1 + 82690 0.66 0.990432
Target:  5'- gGCgCAGCAUgUGCGU---GGCCAUGa -3'
miRNA:   3'- gCGaGUUGUAgACGUAgugCCGGUAC- -5'
15804 3' -52.4 NC_004065.1 + 67093 0.66 0.990432
Target:  5'- cCGCgUCGA--UCUGg--CGCGGCCAUGg -3'
miRNA:   3'- -GCG-AGUUguAGACguaGUGCCGGUAC- -5'
15804 3' -52.4 NC_004065.1 + 153958 0.66 0.990432
Target:  5'- aGCcugCGACuuGUCUGCgccGUCGCGGUCGUc -3'
miRNA:   3'- gCGa--GUUG--UAGACG---UAGUGCCGGUAc -5'
15804 3' -52.4 NC_004065.1 + 168900 0.66 0.990432
Target:  5'- uGCUUGACAUCcgGUGUUauguauACGGCCGUc -3'
miRNA:   3'- gCGAGUUGUAGa-CGUAG------UGCCGGUAc -5'
15804 3' -52.4 NC_004065.1 + 129631 0.66 0.990432
Target:  5'- uGCUCcGCAUCUGCGgucuggaaCACagacuGGCCGUc -3'
miRNA:   3'- gCGAGuUGUAGACGUa-------GUG-----CCGGUAc -5'
15804 3' -52.4 NC_004065.1 + 33459 0.66 0.989122
Target:  5'- uGCUUcuGGCAc--GCGuUCGCGGCCGUGg -3'
miRNA:   3'- gCGAG--UUGUagaCGU-AGUGCCGGUAC- -5'
15804 3' -52.4 NC_004065.1 + 99370 0.67 0.987677
Target:  5'- uGC-CGACGUUggGCAUgACGGgCGUGg -3'
miRNA:   3'- gCGaGUUGUAGa-CGUAgUGCCgGUAC- -5'
15804 3' -52.4 NC_004065.1 + 161122 0.67 0.987677
Target:  5'- gCGCUCGGCGUCaccuccaGCuUCAccuCGGCCGUc -3'
miRNA:   3'- -GCGAGUUGUAGa------CGuAGU---GCCGGUAc -5'
15804 3' -52.4 NC_004065.1 + 204223 0.67 0.987677
Target:  5'- uGCUgCGACGUCuucgUGUAUCccauCGGCUAUGc -3'
miRNA:   3'- gCGA-GUUGUAG----ACGUAGu---GCCGGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.