miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15804 5' -53.1 NC_004065.1 + 201781 0.66 0.993556
Target:  5'- aGCCggUCCaGUAGGAucaGGGGgUUGGu -3'
miRNA:   3'- -UGGuaAGGgCAUCCUua-CCUCgAGCC- -5'
15804 5' -53.1 NC_004065.1 + 194384 0.66 0.990398
Target:  5'- gGCCGgucuucgUCCCuGUGGGGAcaGAGCggCGGg -3'
miRNA:   3'- -UGGUa------AGGG-CAUCCUUacCUCGa-GCC- -5'
15804 5' -53.1 NC_004065.1 + 2917 0.66 0.98911
Target:  5'- gGCCA-UCCUGUGGGuacaaGGuuccuggcaccgGGCUCGGc -3'
miRNA:   3'- -UGGUaAGGGCAUCCuua--CC------------UCGAGCC- -5'
15804 5' -53.1 NC_004065.1 + 22096 0.67 0.986135
Target:  5'- -aCGUUUCCGUGGGAAgacacGGAuucuucugcuGUUCGGu -3'
miRNA:   3'- ugGUAAGGGCAUCCUUa----CCU----------CGAGCC- -5'
15804 5' -53.1 NC_004065.1 + 121407 0.68 0.971824
Target:  5'- cACCAgcugCCCGccGGAcggcggcuucagcggAUGGGcGCUCGGg -3'
miRNA:   3'- -UGGUaa--GGGCauCCU---------------UACCU-CGAGCC- -5'
15804 5' -53.1 NC_004065.1 + 151170 0.69 0.96127
Target:  5'- gUCGUUCCCGUAGGg--GGAGa--GGu -3'
miRNA:   3'- uGGUAAGGGCAUCCuuaCCUCgagCC- -5'
15804 5' -53.1 NC_004065.1 + 136125 0.69 0.958072
Target:  5'- gACCGggagCUCGgggaGGGAAgccggacagggaccgGGAGCUCGGg -3'
miRNA:   3'- -UGGUaa--GGGCa---UCCUUa--------------CCUCGAGCC- -5'
15804 5' -53.1 NC_004065.1 + 136189 0.69 0.958072
Target:  5'- gACCGggagCUCGgggaGGGAAgccggacagggaccgGGAGCUCGGg -3'
miRNA:   3'- -UGGUaa--GGGCa---UCCUUa--------------CCUCGAGCC- -5'
15804 5' -53.1 NC_004065.1 + 171061 0.69 0.953922
Target:  5'- uCCGUUCUCGUucuGGAucgacguguUGGAGgUCGGc -3'
miRNA:   3'- uGGUAAGGGCAu--CCUu--------ACCUCgAGCC- -5'
15804 5' -53.1 NC_004065.1 + 198043 0.71 0.90353
Target:  5'- gGCgGUUCCaa-GGGGAUGGAGUUgCGGa -3'
miRNA:   3'- -UGgUAAGGgcaUCCUUACCUCGA-GCC- -5'
15804 5' -53.1 NC_004065.1 + 96872 0.71 0.890689
Target:  5'- cGCCGUUCuggCCGU-GGAccgugGUGGAGCUCa- -3'
miRNA:   3'- -UGGUAAG---GGCAuCCU-----UACCUCGAGcc -5'
15804 5' -53.1 NC_004065.1 + 113708 1.1 0.007922
Target:  5'- gACCAUUCCCGUAGGAAUGGAGCUCGGc -3'
miRNA:   3'- -UGGUAAGGGCAUCCUUACCUCGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.