miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15805 3' -57.7 NC_004065.1 + 121461 0.66 0.943881
Target:  5'- uUCGACGaccaggucGGUCGGcGcGUCCGCGggCGUg -3'
miRNA:   3'- gGGCUGU--------UCGGCC-C-CAGGUGCaaGCA- -5'
15805 3' -57.7 NC_004065.1 + 99970 0.66 0.934935
Target:  5'- gCCgCGGCGugcucgGGCCGcGGGUCguCGUcuUCGUc -3'
miRNA:   3'- -GG-GCUGU------UCGGC-CCCAGguGCA--AGCA- -5'
15805 3' -57.7 NC_004065.1 + 101188 0.66 0.934935
Target:  5'- -aCGugAacagguugcGGCCGGGGUCgGCGgugaaacauUUCGUg -3'
miRNA:   3'- ggGCugU---------UCGGCCCCAGgUGC---------AAGCA- -5'
15805 3' -57.7 NC_004065.1 + 59008 0.66 0.925135
Target:  5'- -gCGAaAGGCCaGGGUCgGCgGUUCGUg -3'
miRNA:   3'- ggGCUgUUCGGcCCCAGgUG-CAAGCA- -5'
15805 3' -57.7 NC_004065.1 + 112959 0.66 0.919912
Target:  5'- aCCGACAGcGCCGcGG-CCgaACGUUCGc -3'
miRNA:   3'- gGGCUGUU-CGGCcCCaGG--UGCAAGCa -5'
15805 3' -57.7 NC_004065.1 + 76306 0.67 0.914476
Target:  5'- uCUCGuCGAGCCGGaGGaUCCGCcg-CGUg -3'
miRNA:   3'- -GGGCuGUUCGGCC-CC-AGGUGcaaGCA- -5'
15805 3' -57.7 NC_004065.1 + 16439 0.67 0.908826
Target:  5'- gCCCGagcccacuaGCGAGCCc-GGUaCCACGUUCGc -3'
miRNA:   3'- -GGGC---------UGUUCGGccCCA-GGUGCAAGCa -5'
15805 3' -57.7 NC_004065.1 + 7314 0.67 0.896276
Target:  5'- uCCUGACGaucgAGCCGGuGGUaCCGgacgcggcggagcCGUUCGg -3'
miRNA:   3'- -GGGCUGU----UCGGCC-CCA-GGU-------------GCAAGCa -5'
15805 3' -57.7 NC_004065.1 + 149065 0.67 0.890617
Target:  5'- -gCGGCAGGCCgaucGGGGUCguCGUcacgaUCGUc -3'
miRNA:   3'- ggGCUGUUCGG----CCCCAGguGCA-----AGCA- -5'
15805 3' -57.7 NC_004065.1 + 117164 0.68 0.870575
Target:  5'- aCCGACAGcGCCgacGGGGUCCGCc----- -3'
miRNA:   3'- gGGCUGUU-CGG---CCCCAGGUGcaagca -5'
15805 3' -57.7 NC_004065.1 + 143084 0.68 0.863505
Target:  5'- -gCGACGAGCgaaucuacgUGGGGUCCAUcUUCGc -3'
miRNA:   3'- ggGCUGUUCG---------GCCCCAGGUGcAAGCa -5'
15805 3' -57.7 NC_004065.1 + 159172 0.68 0.863505
Target:  5'- gCUgGGCGAacaucCCGGGGUCCGCGUcuuucuucucuUCGa -3'
miRNA:   3'- -GGgCUGUUc----GGCCCCAGGUGCA-----------AGCa -5'
15805 3' -57.7 NC_004065.1 + 130278 0.68 0.856247
Target:  5'- cCCCGGCGAGUguuucgacaCGGGGaucuacagCCACGggCGc -3'
miRNA:   3'- -GGGCUGUUCG---------GCCCCa-------GGUGCaaGCa -5'
15805 3' -57.7 NC_004065.1 + 132702 0.69 0.833404
Target:  5'- aCCCGACgGGGUCGGGGcggCugGUUaCGUa -3'
miRNA:   3'- -GGGCUG-UUCGGCCCCag-GugCAA-GCA- -5'
15805 3' -57.7 NC_004065.1 + 163286 0.69 0.833404
Target:  5'- uCgCGACGccGCCGGGGUCCgACGgcaCGg -3'
miRNA:   3'- -GgGCUGUu-CGGCCCCAGG-UGCaa-GCa -5'
15805 3' -57.7 NC_004065.1 + 218731 0.69 0.817345
Target:  5'- gCCGACAucguAGCCGuacGUCCACG-UCGUg -3'
miRNA:   3'- gGGCUGU----UCGGCcc-CAGGUGCaAGCA- -5'
15805 3' -57.7 NC_004065.1 + 50909 0.69 0.817345
Target:  5'- aCCGccacCAGGCaCGGGGUUCACGggCa- -3'
miRNA:   3'- gGGCu---GUUCG-GCCCCAGGUGCaaGca -5'
15805 3' -57.7 NC_004065.1 + 204759 0.69 0.817345
Target:  5'- gCCCGACAGGCCGGGGaCaGCu----- -3'
miRNA:   3'- -GGGCUGUUCGGCCCCaGgUGcaagca -5'
15805 3' -57.7 NC_004065.1 + 182435 0.69 0.800681
Target:  5'- gCUgGGC-AGCCgGGGGUCCugGUgaCGUa -3'
miRNA:   3'- -GGgCUGuUCGG-CCCCAGGugCAa-GCA- -5'
15805 3' -57.7 NC_004065.1 + 138695 0.7 0.79214
Target:  5'- uCCCGAUAAGCgGGcgaucguggagcGGUCCucAgGUUCGUg -3'
miRNA:   3'- -GGGCUGUUCGgCC------------CCAGG--UgCAAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.