miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15805 5' -54.7 NC_004065.1 + 130130 0.66 0.984784
Target:  5'- gGCGC-AAgCUGGGcCUgaGGGUGAUCa -3'
miRNA:   3'- -CGUGcUUgGACUCaGAggCCCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 4388 0.66 0.984784
Target:  5'- gGCGgGAGCCgGAGUgCUguUCGgagcGGUGGCCa -3'
miRNA:   3'- -CGUgCUUGGaCUCA-GA--GGC----CCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 74210 0.66 0.982807
Target:  5'- uCGCGAACCUGAGcccgugaugguaaUCggCGcGaGUGACCu -3'
miRNA:   3'- cGUGCUUGGACUC-------------AGagGC-C-CACUGG- -5'
15805 5' -54.7 NC_004065.1 + 195839 0.66 0.981049
Target:  5'- cGCuCGAGCCcguccGAGUCuUCCGaGGUcGACg -3'
miRNA:   3'- -CGuGCUUGGa----CUCAG-AGGC-CCA-CUGg -5'
15805 5' -54.7 NC_004065.1 + 128956 0.66 0.980641
Target:  5'- gGCGCGAguucucggagaugACUgccGUCUCgcucaauCGGGUGGCCg -3'
miRNA:   3'- -CGUGCU-------------UGGacuCAGAG-------GCCCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 34066 0.66 0.980435
Target:  5'- aGCGCGAGgccugcucguaguuCCUGAG-CUggaCCaGGUGAUCg -3'
miRNA:   3'- -CGUGCUU--------------GGACUCaGA---GGcCCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 202483 0.66 0.979161
Target:  5'- aCGCGGcCCUcuuuuacaccaUCCGGGUGACCa -3'
miRNA:   3'- cGUGCUuGGAcucag------AGGCCCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 86756 0.66 0.978943
Target:  5'- uGCugG-ACCaGGGUCUgacaguaguaCGGGUGACg -3'
miRNA:   3'- -CGugCuUGGaCUCAGAg---------GCCCACUGg -5'
15805 5' -54.7 NC_004065.1 + 119514 0.66 0.976668
Target:  5'- cGCgGCGAGCCUGucgacauccuUgUCCGGGgcGGCCg -3'
miRNA:   3'- -CG-UGCUUGGACuc--------AgAGGCCCa-CUGG- -5'
15805 5' -54.7 NC_004065.1 + 80294 0.66 0.976668
Target:  5'- cGCGCuGGACCgcuaUGAGUCcgagggCCGGcGcGGCCg -3'
miRNA:   3'- -CGUG-CUUGG----ACUCAGa-----GGCC-CaCUGG- -5'
15805 5' -54.7 NC_004065.1 + 123903 0.66 0.976668
Target:  5'- cCGCGAACggGAcgGUgUUCGaGGUGACCg -3'
miRNA:   3'- cGUGCUUGgaCU--CAgAGGC-CCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 127986 0.66 0.976668
Target:  5'- cGCcCGGccGCCgcGGGUCaCCGaGGUGGCCc -3'
miRNA:   3'- -CGuGCU--UGGa-CUCAGaGGC-CCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 94544 0.67 0.974218
Target:  5'- -gGCGAACCUGcG-CgagCCG-GUGACCu -3'
miRNA:   3'- cgUGCUUGGACuCaGa--GGCcCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 28980 0.67 0.974218
Target:  5'- aCACGGAUC--AGUCUCCGgcggcGGUGGCg -3'
miRNA:   3'- cGUGCUUGGacUCAGAGGC-----CCACUGg -5'
15805 5' -54.7 NC_004065.1 + 208886 0.67 0.971585
Target:  5'- uGCGCGGugacggaCUGAGuUCUCCGGGcGcagcagaaaguGCCa -3'
miRNA:   3'- -CGUGCUug-----GACUC-AGAGGCCCaC-----------UGG- -5'
15805 5' -54.7 NC_004065.1 + 206579 0.67 0.971585
Target:  5'- uGCACGAugggGCCUcGGUCaagCgGGGggaUGGCCg -3'
miRNA:   3'- -CGUGCU----UGGAcUCAGa--GgCCC---ACUGG- -5'
15805 5' -54.7 NC_004065.1 + 136540 0.67 0.971585
Target:  5'- uGCugGu-CCUGGGg-UCCGGGgagccgaGGCCg -3'
miRNA:   3'- -CGugCuuGGACUCagAGGCCCa------CUGG- -5'
15805 5' -54.7 NC_004065.1 + 229418 0.67 0.968765
Target:  5'- -gACGAGCCUGAgcgcguaacugGUCUgCCaccacgGGGUGGCg -3'
miRNA:   3'- cgUGCUUGGACU-----------CAGA-GG------CCCACUGg -5'
15805 5' -54.7 NC_004065.1 + 161447 0.67 0.968765
Target:  5'- aCACGuuguuccuACCUGAGagCUCCGGGccuucggGACg -3'
miRNA:   3'- cGUGCu-------UGGACUCa-GAGGCCCa------CUGg -5'
15805 5' -54.7 NC_004065.1 + 95177 0.67 0.968765
Target:  5'- uGCAgGGuCCaGGgcccGUCUCCGGGggaGGCCg -3'
miRNA:   3'- -CGUgCUuGGaCU----CAGAGGCCCa--CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.