Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15805 | 5' | -54.7 | NC_004065.1 | + | 112729 | 1.14 | 0.003146 |
Target: 5'- uGCACGAACCUGAGUCUCCGGGUGACCa -3' miRNA: 3'- -CGUGCUUGGACUCAGAGGCCCACUGG- -5' |
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15805 | 5' | -54.7 | NC_004065.1 | + | 39646 | 0.74 | 0.692779 |
Target: 5'- aGCuGCGAGCCUGAaggCUaCGGGUGGCUg -3' miRNA: 3'- -CG-UGCUUGGACUca-GAgGCCCACUGG- -5' |
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15805 | 5' | -54.7 | NC_004065.1 | + | 182468 | 0.74 | 0.731376 |
Target: 5'- --cUGGGCCUGGGUCgCUGGGUGGgCg -3' miRNA: 3'- cguGCUUGGACUCAGaGGCCCACUgG- -5' |
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15805 | 5' | -54.7 | NC_004065.1 | + | 464 | 0.74 | 0.731376 |
Target: 5'- cGCGCGcucGCCUGAGUCagccUCCGGGccgcgcGCCg -3' miRNA: 3'- -CGUGCu--UGGACUCAG----AGGCCCac----UGG- -5' |
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15805 | 5' | -54.7 | NC_004065.1 | + | 122696 | 0.73 | 0.750225 |
Target: 5'- aCACGAGCgUGuGUCUgCGGGUG-CUg -3' miRNA: 3'- cGUGCUUGgACuCAGAgGCCCACuGG- -5' |
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15805 | 5' | -54.7 | NC_004065.1 | + | 130558 | 0.71 | 0.845191 |
Target: 5'- cGCACGucuCCUGguccaAGaCUCCGGGcaucUGGCCg -3' miRNA: 3'- -CGUGCuu-GGAC-----UCaGAGGCCC----ACUGG- -5' |
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15805 | 5' | -54.7 | NC_004065.1 | + | 81654 | 0.7 | 0.875493 |
Target: 5'- aGCAUGucUCUGGuGUCgcugacgcugacggaCCGGGUGACCa -3' miRNA: 3'- -CGUGCuuGGACU-CAGa--------------GGCCCACUGG- -5' |
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15805 | 5' | -54.7 | NC_004065.1 | + | 146565 | 0.7 | 0.906607 |
Target: 5'- uGCAgGGGCUagGGGUCgcggguaaggggaUCgGGGUGGCCa -3' miRNA: 3'- -CGUgCUUGGa-CUCAG-------------AGgCCCACUGG- -5' |
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15805 | 5' | -54.7 | NC_004065.1 | + | 105093 | 0.7 | 0.907202 |
Target: 5'- aCGCGAACCUG-GUg-CgCGuGGUGGCCg -3' miRNA: 3'- cGUGCUUGGACuCAgaG-GC-CCACUGG- -5' |
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15805 | 5' | -54.7 | NC_004065.1 | + | 120530 | 0.7 | 0.907202 |
Target: 5'- -gACGAuguCgaGGGUCUCCGGuGUG-CCg -3' miRNA: 3'- cgUGCUu--GgaCUCAGAGGCC-CACuGG- -5' |
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15805 | 5' | -54.7 | NC_004065.1 | + | 14976 | 0.69 | 0.913033 |
Target: 5'- aGCACGuaccugcaGACCgUGAGggagCUCgUGGGUGACg -3' miRNA: 3'- -CGUGC--------UUGG-ACUCa---GAG-GCCCACUGg -5' |
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15805 | 5' | -54.7 | NC_004065.1 | + | 29374 | 0.69 | 0.934128 |
Target: 5'- -gACGAACUUGcGUCgUCUGGGUGGg- -3' miRNA: 3'- cgUGCUUGGACuCAG-AGGCCCACUgg -5' |
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15805 | 5' | -54.7 | NC_004065.1 | + | 29019 | 0.69 | 0.934129 |
Target: 5'- cGCACGcGGCCUcGAGUCagaCCGGcGUcgcGACCc -3' miRNA: 3'- -CGUGC-UUGGA-CUCAGa--GGCC-CA---CUGG- -5' |
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15805 | 5' | -54.7 | NC_004065.1 | + | 44766 | 0.69 | 0.934129 |
Target: 5'- aGCcCGGGCCaGGGUCgUCCGaGGccugGGCCg -3' miRNA: 3'- -CGuGCUUGGaCUCAG-AGGC-CCa---CUGG- -5' |
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15805 | 5' | -54.7 | NC_004065.1 | + | 192426 | 0.68 | 0.938843 |
Target: 5'- aGCAUGAcgACCUGAGcauggaaaUCUCCGGcauUGAgCg -3' miRNA: 3'- -CGUGCU--UGGACUC--------AGAGGCCc--ACUgG- -5' |
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15805 | 5' | -54.7 | NC_004065.1 | + | 106675 | 0.68 | 0.943335 |
Target: 5'- cGCACGGGCUguAGaUCUCCGacGGUGcGCCu -3' miRNA: 3'- -CGUGCUUGGacUC-AGAGGC--CCAC-UGG- -5' |
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15805 | 5' | -54.7 | NC_004065.1 | + | 221837 | 0.68 | 0.951264 |
Target: 5'- -aACGAgcGCCUGGGUgaucgagguauguUUUCGGGUGAUg -3' miRNA: 3'- cgUGCU--UGGACUCA-------------GAGGCCCACUGg -5' |
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15805 | 5' | -54.7 | NC_004065.1 | + | 101629 | 0.68 | 0.951659 |
Target: 5'- -gGCGGACCcGGGUCgaaUCCGGGc-ACCu -3' miRNA: 3'- cgUGCUUGGaCUCAG---AGGCCCacUGG- -5' |
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15805 | 5' | -54.7 | NC_004065.1 | + | 225145 | 0.68 | 0.955496 |
Target: 5'- aCGCGGACgCUc---CUCCuGGGUGACCg -3' miRNA: 3'- cGUGCUUG-GAcucaGAGG-CCCACUGG- -5' |
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15805 | 5' | -54.7 | NC_004065.1 | + | 170523 | 0.68 | 0.959121 |
Target: 5'- aUACGAACUcGAGUCUCCcaGGGaGAUUc -3' miRNA: 3'- cGUGCUUGGaCUCAGAGG--CCCaCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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