miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15805 5' -54.7 NC_004065.1 + 188907 0.67 0.965751
Target:  5'- gGCA-GGugCgcGGGUCUCCGGGUuucACCu -3'
miRNA:   3'- -CGUgCUugGa-CUCAGAGGCCCAc--UGG- -5'
15805 5' -54.7 NC_004065.1 + 149670 0.67 0.962538
Target:  5'- aGCGCGuuGACCguguccaGGGUCUgcaggugaacgCCGGGgGGCCg -3'
miRNA:   3'- -CGUGC--UUGGa------CUCAGA-----------GGCCCaCUGG- -5'
15805 5' -54.7 NC_004065.1 + 170523 0.68 0.959121
Target:  5'- aUACGAACUcGAGUCUCCcaGGGaGAUUc -3'
miRNA:   3'- cGUGCUUGGaCUCAGAGG--CCCaCUGG- -5'
15805 5' -54.7 NC_004065.1 + 225145 0.68 0.955496
Target:  5'- aCGCGGACgCUc---CUCCuGGGUGACCg -3'
miRNA:   3'- cGUGCUUG-GAcucaGAGG-CCCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 101629 0.68 0.951659
Target:  5'- -gGCGGACCcGGGUCgaaUCCGGGc-ACCu -3'
miRNA:   3'- cgUGCUUGGaCUCAG---AGGCCCacUGG- -5'
15805 5' -54.7 NC_004065.1 + 221837 0.68 0.951264
Target:  5'- -aACGAgcGCCUGGGUgaucgagguauguUUUCGGGUGAUg -3'
miRNA:   3'- cgUGCU--UGGACUCA-------------GAGGCCCACUGg -5'
15805 5' -54.7 NC_004065.1 + 106675 0.68 0.943335
Target:  5'- cGCACGGGCUguAGaUCUCCGacGGUGcGCCu -3'
miRNA:   3'- -CGUGCUUGGacUC-AGAGGC--CCAC-UGG- -5'
15805 5' -54.7 NC_004065.1 + 192426 0.68 0.938843
Target:  5'- aGCAUGAcgACCUGAGcauggaaaUCUCCGGcauUGAgCg -3'
miRNA:   3'- -CGUGCU--UGGACUC--------AGAGGCCc--ACUgG- -5'
15805 5' -54.7 NC_004065.1 + 44766 0.69 0.934129
Target:  5'- aGCcCGGGCCaGGGUCgUCCGaGGccugGGCCg -3'
miRNA:   3'- -CGuGCUUGGaCUCAG-AGGC-CCa---CUGG- -5'
15805 5' -54.7 NC_004065.1 + 29019 0.69 0.934129
Target:  5'- cGCACGcGGCCUcGAGUCagaCCGGcGUcgcGACCc -3'
miRNA:   3'- -CGUGC-UUGGA-CUCAGa--GGCC-CA---CUGG- -5'
15805 5' -54.7 NC_004065.1 + 29374 0.69 0.934128
Target:  5'- -gACGAACUUGcGUCgUCUGGGUGGg- -3'
miRNA:   3'- cgUGCUUGGACuCAG-AGGCCCACUgg -5'
15805 5' -54.7 NC_004065.1 + 14976 0.69 0.913033
Target:  5'- aGCACGuaccugcaGACCgUGAGggagCUCgUGGGUGACg -3'
miRNA:   3'- -CGUGC--------UUGG-ACUCa---GAG-GCCCACUGg -5'
15805 5' -54.7 NC_004065.1 + 105093 0.7 0.907202
Target:  5'- aCGCGAACCUG-GUg-CgCGuGGUGGCCg -3'
miRNA:   3'- cGUGCUUGGACuCAgaG-GC-CCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 120530 0.7 0.907202
Target:  5'- -gACGAuguCgaGGGUCUCCGGuGUG-CCg -3'
miRNA:   3'- cgUGCUu--GgaCUCAGAGGCC-CACuGG- -5'
15805 5' -54.7 NC_004065.1 + 146565 0.7 0.906607
Target:  5'- uGCAgGGGCUagGGGUCgcggguaaggggaUCgGGGUGGCCa -3'
miRNA:   3'- -CGUgCUUGGa-CUCAG-------------AGgCCCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 81654 0.7 0.875493
Target:  5'- aGCAUGucUCUGGuGUCgcugacgcugacggaCCGGGUGACCa -3'
miRNA:   3'- -CGUGCuuGGACU-CAGa--------------GGCCCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 130558 0.71 0.845191
Target:  5'- cGCACGucuCCUGguccaAGaCUCCGGGcaucUGGCCg -3'
miRNA:   3'- -CGUGCuu-GGAC-----UCaGAGGCCC----ACUGG- -5'
15805 5' -54.7 NC_004065.1 + 122696 0.73 0.750225
Target:  5'- aCACGAGCgUGuGUCUgCGGGUG-CUg -3'
miRNA:   3'- cGUGCUUGgACuCAGAgGCCCACuGG- -5'
15805 5' -54.7 NC_004065.1 + 182468 0.74 0.731376
Target:  5'- --cUGGGCCUGGGUCgCUGGGUGGgCg -3'
miRNA:   3'- cguGCUUGGACUCAGaGGCCCACUgG- -5'
15805 5' -54.7 NC_004065.1 + 464 0.74 0.731376
Target:  5'- cGCGCGcucGCCUGAGUCagccUCCGGGccgcgcGCCg -3'
miRNA:   3'- -CGUGCu--UGGACUCAG----AGGCCCac----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.