miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15805 5' -54.7 NC_004065.1 + 464 0.74 0.731376
Target:  5'- cGCGCGcucGCCUGAGUCagccUCCGGGccgcgcGCCg -3'
miRNA:   3'- -CGUGCu--UGGACUCAG----AGGCCCac----UGG- -5'
15805 5' -54.7 NC_004065.1 + 4388 0.66 0.984784
Target:  5'- gGCGgGAGCCgGAGUgCUguUCGgagcGGUGGCCa -3'
miRNA:   3'- -CGUgCUUGGaCUCA-GA--GGC----CCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 14976 0.69 0.913033
Target:  5'- aGCACGuaccugcaGACCgUGAGggagCUCgUGGGUGACg -3'
miRNA:   3'- -CGUGC--------UUGG-ACUCa---GAG-GCCCACUGg -5'
15805 5' -54.7 NC_004065.1 + 28980 0.67 0.974218
Target:  5'- aCACGGAUC--AGUCUCCGgcggcGGUGGCg -3'
miRNA:   3'- cGUGCUUGGacUCAGAGGC-----CCACUGg -5'
15805 5' -54.7 NC_004065.1 + 29019 0.69 0.934129
Target:  5'- cGCACGcGGCCUcGAGUCagaCCGGcGUcgcGACCc -3'
miRNA:   3'- -CGUGC-UUGGA-CUCAGa--GGCC-CA---CUGG- -5'
15805 5' -54.7 NC_004065.1 + 29374 0.69 0.934128
Target:  5'- -gACGAACUUGcGUCgUCUGGGUGGg- -3'
miRNA:   3'- cgUGCUUGGACuCAG-AGGCCCACUgg -5'
15805 5' -54.7 NC_004065.1 + 34066 0.66 0.980435
Target:  5'- aGCGCGAGgccugcucguaguuCCUGAG-CUggaCCaGGUGAUCg -3'
miRNA:   3'- -CGUGCUU--------------GGACUCaGA---GGcCCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 39646 0.74 0.692779
Target:  5'- aGCuGCGAGCCUGAaggCUaCGGGUGGCUg -3'
miRNA:   3'- -CG-UGCUUGGACUca-GAgGCCCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 44766 0.69 0.934129
Target:  5'- aGCcCGGGCCaGGGUCgUCCGaGGccugGGCCg -3'
miRNA:   3'- -CGuGCUUGGaCUCAG-AGGC-CCa---CUGG- -5'
15805 5' -54.7 NC_004065.1 + 74210 0.66 0.982807
Target:  5'- uCGCGAACCUGAGcccgugaugguaaUCggCGcGaGUGACCu -3'
miRNA:   3'- cGUGCUUGGACUC-------------AGagGC-C-CACUGG- -5'
15805 5' -54.7 NC_004065.1 + 80294 0.66 0.976668
Target:  5'- cGCGCuGGACCgcuaUGAGUCcgagggCCGGcGcGGCCg -3'
miRNA:   3'- -CGUG-CUUGG----ACUCAGa-----GGCC-CaCUGG- -5'
15805 5' -54.7 NC_004065.1 + 81654 0.7 0.875493
Target:  5'- aGCAUGucUCUGGuGUCgcugacgcugacggaCCGGGUGACCa -3'
miRNA:   3'- -CGUGCuuGGACU-CAGa--------------GGCCCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 86756 0.66 0.978943
Target:  5'- uGCugG-ACCaGGGUCUgacaguaguaCGGGUGACg -3'
miRNA:   3'- -CGugCuUGGaCUCAGAg---------GCCCACUGg -5'
15805 5' -54.7 NC_004065.1 + 94544 0.67 0.974218
Target:  5'- -gGCGAACCUGcG-CgagCCG-GUGACCu -3'
miRNA:   3'- cgUGCUUGGACuCaGa--GGCcCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 95177 0.67 0.968765
Target:  5'- uGCAgGGuCCaGGgcccGUCUCCGGGggaGGCCg -3'
miRNA:   3'- -CGUgCUuGGaCU----CAGAGGCCCa--CUGG- -5'
15805 5' -54.7 NC_004065.1 + 101629 0.68 0.951659
Target:  5'- -gGCGGACCcGGGUCgaaUCCGGGc-ACCu -3'
miRNA:   3'- cgUGCUUGGaCUCAG---AGGCCCacUGG- -5'
15805 5' -54.7 NC_004065.1 + 105093 0.7 0.907202
Target:  5'- aCGCGAACCUG-GUg-CgCGuGGUGGCCg -3'
miRNA:   3'- cGUGCUUGGACuCAgaG-GC-CCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 106675 0.68 0.943335
Target:  5'- cGCACGGGCUguAGaUCUCCGacGGUGcGCCu -3'
miRNA:   3'- -CGUGCUUGGacUC-AGAGGC--CCAC-UGG- -5'
15805 5' -54.7 NC_004065.1 + 112729 1.14 0.003146
Target:  5'- uGCACGAACCUGAGUCUCCGGGUGACCa -3'
miRNA:   3'- -CGUGCUUGGACUCAGAGGCCCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 119514 0.66 0.976668
Target:  5'- cGCgGCGAGCCUGucgacauccuUgUCCGGGgcGGCCg -3'
miRNA:   3'- -CG-UGCUUGGACuc--------AgAGGCCCa-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.