miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15805 5' -54.7 NC_004065.1 + 120530 0.7 0.907202
Target:  5'- -gACGAuguCgaGGGUCUCCGGuGUG-CCg -3'
miRNA:   3'- cgUGCUu--GgaCUCAGAGGCC-CACuGG- -5'
15805 5' -54.7 NC_004065.1 + 122696 0.73 0.750225
Target:  5'- aCACGAGCgUGuGUCUgCGGGUG-CUg -3'
miRNA:   3'- cGUGCUUGgACuCAGAgGCCCACuGG- -5'
15805 5' -54.7 NC_004065.1 + 123903 0.66 0.976668
Target:  5'- cCGCGAACggGAcgGUgUUCGaGGUGACCg -3'
miRNA:   3'- cGUGCUUGgaCU--CAgAGGC-CCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 127986 0.66 0.976668
Target:  5'- cGCcCGGccGCCgcGGGUCaCCGaGGUGGCCc -3'
miRNA:   3'- -CGuGCU--UGGa-CUCAGaGGC-CCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 128956 0.66 0.980641
Target:  5'- gGCGCGAguucucggagaugACUgccGUCUCgcucaauCGGGUGGCCg -3'
miRNA:   3'- -CGUGCU-------------UGGacuCAGAG-------GCCCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 130130 0.66 0.984784
Target:  5'- gGCGC-AAgCUGGGcCUgaGGGUGAUCa -3'
miRNA:   3'- -CGUGcUUgGACUCaGAggCCCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 130558 0.71 0.845191
Target:  5'- cGCACGucuCCUGguccaAGaCUCCGGGcaucUGGCCg -3'
miRNA:   3'- -CGUGCuu-GGAC-----UCaGAGGCCC----ACUGG- -5'
15805 5' -54.7 NC_004065.1 + 136540 0.67 0.971585
Target:  5'- uGCugGu-CCUGGGg-UCCGGGgagccgaGGCCg -3'
miRNA:   3'- -CGugCuuGGACUCagAGGCCCa------CUGG- -5'
15805 5' -54.7 NC_004065.1 + 146565 0.7 0.906607
Target:  5'- uGCAgGGGCUagGGGUCgcggguaaggggaUCgGGGUGGCCa -3'
miRNA:   3'- -CGUgCUUGGa-CUCAG-------------AGgCCCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 149670 0.67 0.962538
Target:  5'- aGCGCGuuGACCguguccaGGGUCUgcaggugaacgCCGGGgGGCCg -3'
miRNA:   3'- -CGUGC--UUGGa------CUCAGA-----------GGCCCaCUGG- -5'
15805 5' -54.7 NC_004065.1 + 161447 0.67 0.968765
Target:  5'- aCACGuuguuccuACCUGAGagCUCCGGGccuucggGACg -3'
miRNA:   3'- cGUGCu-------UGGACUCa-GAGGCCCa------CUGg -5'
15805 5' -54.7 NC_004065.1 + 170523 0.68 0.959121
Target:  5'- aUACGAACUcGAGUCUCCcaGGGaGAUUc -3'
miRNA:   3'- cGUGCUUGGaCUCAGAGG--CCCaCUGG- -5'
15805 5' -54.7 NC_004065.1 + 182468 0.74 0.731376
Target:  5'- --cUGGGCCUGGGUCgCUGGGUGGgCg -3'
miRNA:   3'- cguGCUUGGACUCAGaGGCCCACUgG- -5'
15805 5' -54.7 NC_004065.1 + 188907 0.67 0.965751
Target:  5'- gGCA-GGugCgcGGGUCUCCGGGUuucACCu -3'
miRNA:   3'- -CGUgCUugGa-CUCAGAGGCCCAc--UGG- -5'
15805 5' -54.7 NC_004065.1 + 192426 0.68 0.938843
Target:  5'- aGCAUGAcgACCUGAGcauggaaaUCUCCGGcauUGAgCg -3'
miRNA:   3'- -CGUGCU--UGGACUC--------AGAGGCCc--ACUgG- -5'
15805 5' -54.7 NC_004065.1 + 195839 0.66 0.981049
Target:  5'- cGCuCGAGCCcguccGAGUCuUCCGaGGUcGACg -3'
miRNA:   3'- -CGuGCUUGGa----CUCAG-AGGC-CCA-CUGg -5'
15805 5' -54.7 NC_004065.1 + 202483 0.66 0.979161
Target:  5'- aCGCGGcCCUcuuuuacaccaUCCGGGUGACCa -3'
miRNA:   3'- cGUGCUuGGAcucag------AGGCCCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 206579 0.67 0.971585
Target:  5'- uGCACGAugggGCCUcGGUCaagCgGGGggaUGGCCg -3'
miRNA:   3'- -CGUGCU----UGGAcUCAGa--GgCCC---ACUGG- -5'
15805 5' -54.7 NC_004065.1 + 208886 0.67 0.971585
Target:  5'- uGCGCGGugacggaCUGAGuUCUCCGGGcGcagcagaaaguGCCa -3'
miRNA:   3'- -CGUGCUug-----GACUC-AGAGGCCCaC-----------UGG- -5'
15805 5' -54.7 NC_004065.1 + 221837 0.68 0.951264
Target:  5'- -aACGAgcGCCUGGGUgaucgagguauguUUUCGGGUGAUg -3'
miRNA:   3'- cgUGCU--UGGACUCA-------------GAGGCCCACUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.