miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15805 5' -54.7 NC_004065.1 + 182468 0.74 0.731376
Target:  5'- --cUGGGCCUGGGUCgCUGGGUGGgCg -3'
miRNA:   3'- cguGCUUGGACUCAGaGGCCCACUgG- -5'
15805 5' -54.7 NC_004065.1 + 161447 0.67 0.968765
Target:  5'- aCACGuuguuccuACCUGAGagCUCCGGGccuucggGACg -3'
miRNA:   3'- cGUGCu-------UGGACUCa-GAGGCCCa------CUGg -5'
15805 5' -54.7 NC_004065.1 + 229418 0.67 0.968765
Target:  5'- -gACGAGCCUGAgcgcguaacugGUCUgCCaccacgGGGUGGCg -3'
miRNA:   3'- cgUGCUUGGACU-----------CAGA-GG------CCCACUGg -5'
15805 5' -54.7 NC_004065.1 + 208886 0.67 0.971585
Target:  5'- uGCGCGGugacggaCUGAGuUCUCCGGGcGcagcagaaaguGCCa -3'
miRNA:   3'- -CGUGCUug-----GACUC-AGAGGCCCaC-----------UGG- -5'
15805 5' -54.7 NC_004065.1 + 127986 0.66 0.976668
Target:  5'- cGCcCGGccGCCgcGGGUCaCCGaGGUGGCCc -3'
miRNA:   3'- -CGuGCU--UGGa-CUCAGaGGC-CCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 202483 0.66 0.979161
Target:  5'- aCGCGGcCCUcuuuuacaccaUCCGGGUGACCa -3'
miRNA:   3'- cGUGCUuGGAcucag------AGGCCCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 34066 0.66 0.980435
Target:  5'- aGCGCGAGgccugcucguaguuCCUGAG-CUggaCCaGGUGAUCg -3'
miRNA:   3'- -CGUGCUU--------------GGACUCaGA---GGcCCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 128956 0.66 0.980641
Target:  5'- gGCGCGAguucucggagaugACUgccGUCUCgcucaauCGGGUGGCCg -3'
miRNA:   3'- -CGUGCU-------------UGGacuCAGAG-------GCCCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 74210 0.66 0.982807
Target:  5'- uCGCGAACCUGAGcccgugaugguaaUCggCGcGaGUGACCu -3'
miRNA:   3'- cGUGCUUGGACUC-------------AGagGC-C-CACUGG- -5'
15805 5' -54.7 NC_004065.1 + 188907 0.67 0.965751
Target:  5'- gGCA-GGugCgcGGGUCUCCGGGUuucACCu -3'
miRNA:   3'- -CGUgCUugGa-CUCAGAGGCCCAc--UGG- -5'
15805 5' -54.7 NC_004065.1 + 149670 0.67 0.962538
Target:  5'- aGCGCGuuGACCguguccaGGGUCUgcaggugaacgCCGGGgGGCCg -3'
miRNA:   3'- -CGUGC--UUGGa------CUCAGA-----------GGCCCaCUGG- -5'
15805 5' -54.7 NC_004065.1 + 464 0.74 0.731376
Target:  5'- cGCGCGcucGCCUGAGUCagccUCCGGGccgcgcGCCg -3'
miRNA:   3'- -CGUGCu--UGGACUCAG----AGGCCCac----UGG- -5'
15805 5' -54.7 NC_004065.1 + 130558 0.71 0.845191
Target:  5'- cGCACGucuCCUGguccaAGaCUCCGGGcaucUGGCCg -3'
miRNA:   3'- -CGUGCuu-GGAC-----UCaGAGGCCC----ACUGG- -5'
15805 5' -54.7 NC_004065.1 + 120530 0.7 0.907202
Target:  5'- -gACGAuguCgaGGGUCUCCGGuGUG-CCg -3'
miRNA:   3'- cgUGCUu--GgaCUCAGAGGCC-CACuGG- -5'
15805 5' -54.7 NC_004065.1 + 29374 0.69 0.934128
Target:  5'- -gACGAACUUGcGUCgUCUGGGUGGg- -3'
miRNA:   3'- cgUGCUUGGACuCAG-AGGCCCACUgg -5'
15805 5' -54.7 NC_004065.1 + 106675 0.68 0.943335
Target:  5'- cGCACGGGCUguAGaUCUCCGacGGUGcGCCu -3'
miRNA:   3'- -CGUGCUUGGacUC-AGAGGC--CCAC-UGG- -5'
15805 5' -54.7 NC_004065.1 + 101629 0.68 0.951659
Target:  5'- -gGCGGACCcGGGUCgaaUCCGGGc-ACCu -3'
miRNA:   3'- cgUGCUUGGaCUCAG---AGGCCCacUGG- -5'
15805 5' -54.7 NC_004065.1 + 225145 0.68 0.955496
Target:  5'- aCGCGGACgCUc---CUCCuGGGUGACCg -3'
miRNA:   3'- cGUGCUUG-GAcucaGAGG-CCCACUGG- -5'
15805 5' -54.7 NC_004065.1 + 170523 0.68 0.959121
Target:  5'- aUACGAACUcGAGUCUCCcaGGGaGAUUc -3'
miRNA:   3'- cGUGCUUGGaCUCAGAGG--CCCaCUGG- -5'
15805 5' -54.7 NC_004065.1 + 130130 0.66 0.984784
Target:  5'- gGCGC-AAgCUGGGcCUgaGGGUGAUCa -3'
miRNA:   3'- -CGUGcUUgGACUCaGAggCCCACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.