Results 1 - 20 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15805 | 5' | -54.7 | NC_004065.1 | + | 122696 | 0.73 | 0.750225 |
Target: 5'- aCACGAGCgUGuGUCUgCGGGUG-CUg -3' miRNA: 3'- cGUGCUUGgACuCAGAgGCCCACuGG- -5' |
|||||||
15805 | 5' | -54.7 | NC_004065.1 | + | 80294 | 0.66 | 0.976668 |
Target: 5'- cGCGCuGGACCgcuaUGAGUCcgagggCCGGcGcGGCCg -3' miRNA: 3'- -CGUG-CUUGG----ACUCAGa-----GGCC-CaCUGG- -5' |
|||||||
15805 | 5' | -54.7 | NC_004065.1 | + | 86756 | 0.66 | 0.978943 |
Target: 5'- uGCugG-ACCaGGGUCUgacaguaguaCGGGUGACg -3' miRNA: 3'- -CGugCuUGGaCUCAGAg---------GCCCACUGg -5' |
|||||||
15805 | 5' | -54.7 | NC_004065.1 | + | 130130 | 0.66 | 0.984784 |
Target: 5'- gGCGC-AAgCUGGGcCUgaGGGUGAUCa -3' miRNA: 3'- -CGUGcUUgGACUCaGAggCCCACUGG- -5' |
|||||||
15805 | 5' | -54.7 | NC_004065.1 | + | 14976 | 0.69 | 0.913033 |
Target: 5'- aGCACGuaccugcaGACCgUGAGggagCUCgUGGGUGACg -3' miRNA: 3'- -CGUGC--------UUGG-ACUCa---GAG-GCCCACUGg -5' |
|||||||
15805 | 5' | -54.7 | NC_004065.1 | + | 44766 | 0.69 | 0.934129 |
Target: 5'- aGCcCGGGCCaGGGUCgUCCGaGGccugGGCCg -3' miRNA: 3'- -CGuGCUUGGaCUCAG-AGGC-CCa---CUGG- -5' |
|||||||
15805 | 5' | -54.7 | NC_004065.1 | + | 192426 | 0.68 | 0.938843 |
Target: 5'- aGCAUGAcgACCUGAGcauggaaaUCUCCGGcauUGAgCg -3' miRNA: 3'- -CGUGCU--UGGACUC--------AGAGGCCc--ACUgG- -5' |
|||||||
15805 | 5' | -54.7 | NC_004065.1 | + | 221837 | 0.68 | 0.951264 |
Target: 5'- -aACGAgcGCCUGGGUgaucgagguauguUUUCGGGUGAUg -3' miRNA: 3'- cgUGCU--UGGACUCA-------------GAGGCCCACUGg -5' |
|||||||
15805 | 5' | -54.7 | NC_004065.1 | + | 112729 | 1.14 | 0.003146 |
Target: 5'- uGCACGAACCUGAGUCUCCGGGUGACCa -3' miRNA: 3'- -CGUGCUUGGACUCAGAGGCCCACUGG- -5' |
|||||||
15805 | 5' | -54.7 | NC_004065.1 | + | 119514 | 0.66 | 0.976668 |
Target: 5'- cGCgGCGAGCCUGucgacauccuUgUCCGGGgcGGCCg -3' miRNA: 3'- -CG-UGCUUGGACuc--------AgAGGCCCa-CUGG- -5' |
|||||||
15805 | 5' | -54.7 | NC_004065.1 | + | 206579 | 0.67 | 0.971585 |
Target: 5'- uGCACGAugggGCCUcGGUCaagCgGGGggaUGGCCg -3' miRNA: 3'- -CGUGCU----UGGAcUCAGa--GgCCC---ACUGG- -5' |
|||||||
15805 | 5' | -54.7 | NC_004065.1 | + | 136540 | 0.67 | 0.971585 |
Target: 5'- uGCugGu-CCUGGGg-UCCGGGgagccgaGGCCg -3' miRNA: 3'- -CGugCuuGGACUCagAGGCCCa------CUGG- -5' |
|||||||
15805 | 5' | -54.7 | NC_004065.1 | + | 81654 | 0.7 | 0.875493 |
Target: 5'- aGCAUGucUCUGGuGUCgcugacgcugacggaCCGGGUGACCa -3' miRNA: 3'- -CGUGCuuGGACU-CAGa--------------GGCCCACUGG- -5' |
|||||||
15805 | 5' | -54.7 | NC_004065.1 | + | 94544 | 0.67 | 0.974218 |
Target: 5'- -gGCGAACCUGcG-CgagCCG-GUGACCu -3' miRNA: 3'- cgUGCUUGGACuCaGa--GGCcCACUGG- -5' |
|||||||
15805 | 5' | -54.7 | NC_004065.1 | + | 146565 | 0.7 | 0.906607 |
Target: 5'- uGCAgGGGCUagGGGUCgcggguaaggggaUCgGGGUGGCCa -3' miRNA: 3'- -CGUgCUUGGa-CUCAG-------------AGgCCCACUGG- -5' |
|||||||
15805 | 5' | -54.7 | NC_004065.1 | + | 95177 | 0.67 | 0.968765 |
Target: 5'- uGCAgGGuCCaGGgcccGUCUCCGGGggaGGCCg -3' miRNA: 3'- -CGUgCUuGGaCU----CAGAGGCCCa--CUGG- -5' |
|||||||
15805 | 5' | -54.7 | NC_004065.1 | + | 28980 | 0.67 | 0.974218 |
Target: 5'- aCACGGAUC--AGUCUCCGgcggcGGUGGCg -3' miRNA: 3'- cGUGCUUGGacUCAGAGGC-----CCACUGg -5' |
|||||||
15805 | 5' | -54.7 | NC_004065.1 | + | 123903 | 0.66 | 0.976668 |
Target: 5'- cCGCGAACggGAcgGUgUUCGaGGUGACCg -3' miRNA: 3'- cGUGCUUGgaCU--CAgAGGC-CCACUGG- -5' |
|||||||
15805 | 5' | -54.7 | NC_004065.1 | + | 105093 | 0.7 | 0.907202 |
Target: 5'- aCGCGAACCUG-GUg-CgCGuGGUGGCCg -3' miRNA: 3'- cGUGCUUGGACuCAgaG-GC-CCACUGG- -5' |
|||||||
15805 | 5' | -54.7 | NC_004065.1 | + | 29019 | 0.69 | 0.934129 |
Target: 5'- cGCACGcGGCCUcGAGUCagaCCGGcGUcgcGACCc -3' miRNA: 3'- -CGUGC-UUGGA-CUCAGa--GGCC-CA---CUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home