miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1581 3' -60.4 NC_001347.2 + 173420 0.66 0.800938
Target:  5'- -cGCUGUUGUa-CGUGGcCAGCCGCa -3'
miRNA:   3'- aaCGACAACGccGCGCUcGUCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 222751 0.66 0.792269
Target:  5'- -cGCUGccGCGGCcauuGCcGCCGCCg -3'
miRNA:   3'- aaCGACaaCGCCGcgcuCGuCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 77761 0.66 0.792269
Target:  5'- -aGCgag-GCGGC-CGAGCGGgCGCa -3'
miRNA:   3'- aaCGacaaCGCCGcGCUCGUCgGCGg -5'
1581 3' -60.4 NC_001347.2 + 173956 0.66 0.792269
Target:  5'- -aGCaaaagUGCGGCuaGAGCgcgGGCCGCg -3'
miRNA:   3'- aaCGaca--ACGCCGcgCUCG---UCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 63102 0.66 0.783465
Target:  5'- gUGCcGccGUGGcCGCc-GCGGCCGCCg -3'
miRNA:   3'- aACGaCaaCGCC-GCGcuCGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 128444 0.66 0.779909
Target:  5'- cUGCUGcguggccgucaaGCGGCGCGA-CGGCgCGCg -3'
miRNA:   3'- aACGACaa----------CGCCGCGCUcGUCG-GCGg -5'
1581 3' -60.4 NC_001347.2 + 25903 0.66 0.774537
Target:  5'- -cGCUGgaaCGcGCGCuuuuGGCGGCCGUCa -3'
miRNA:   3'- aaCGACaacGC-CGCGc---UCGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 88038 0.66 0.76549
Target:  5'- -cGCUGa-GCGGCuGCGGaauGCGGCCcggGCCc -3'
miRNA:   3'- aaCGACaaCGCCG-CGCU---CGUCGG---CGG- -5'
1581 3' -60.4 NC_001347.2 + 162341 0.66 0.76549
Target:  5'- gUUGaCUGcUGCGGUaGCGuGCAaaGUCGCCc -3'
miRNA:   3'- -AAC-GACaACGCCG-CGCuCGU--CGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 159465 0.66 0.76458
Target:  5'- -cGCUcgaugacGaUGuCGGCGCG-GCGGCUGCUg -3'
miRNA:   3'- aaCGA-------CaAC-GCCGCGCuCGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 168516 0.66 0.762755
Target:  5'- -aGCUGUUcgugcaacugcucgGCGGCguacaGCGGGUcGCgCGCCg -3'
miRNA:   3'- aaCGACAA--------------CGCCG-----CGCUCGuCG-GCGG- -5'
1581 3' -60.4 NC_001347.2 + 158669 0.66 0.756334
Target:  5'- -cGCUGUgucGgGGCGCGcGCugguuaaacAGaCCGCCu -3'
miRNA:   3'- aaCGACAa--CgCCGCGCuCG---------UC-GGCGG- -5'
1581 3' -60.4 NC_001347.2 + 157829 0.66 0.756334
Target:  5'- -cGCaGUUGCGGgGCcucaucGCAGCCuugcGCCg -3'
miRNA:   3'- aaCGaCAACGCCgCGcu----CGUCGG----CGG- -5'
1581 3' -60.4 NC_001347.2 + 1901 0.67 0.737725
Target:  5'- gUGCUGcggcugGCuGGCGCuGGGCGcgguGCUGCCc -3'
miRNA:   3'- aACGACaa----CG-CCGCG-CUCGU----CGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 180033 0.67 0.736785
Target:  5'- -cGUUGUugagcauauguacUGUGGCgGCGGGCAGCauCGCg -3'
miRNA:   3'- aaCGACA-------------ACGCCG-CGCUCGUCG--GCGg -5'
1581 3' -60.4 NC_001347.2 + 89041 0.67 0.734903
Target:  5'- -aGCUGUcG-GGCGCGuuGCaacucuugcugcacGGCCGCCc -3'
miRNA:   3'- aaCGACAaCgCCGCGCu-CG--------------UCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 37947 0.67 0.728289
Target:  5'- gUGCaGgUGCaGCGCGucccagcGCGGCCGCUc -3'
miRNA:   3'- aACGaCaACGcCGCGCu------CGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 154814 0.67 0.728289
Target:  5'- gUGUcgaUGgccaGCGGCGCGcaCAGUCGCCg -3'
miRNA:   3'- aACG---ACaa--CGCCGCGCucGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 157200 0.67 0.718776
Target:  5'- -aGCUGgugaucggccGCGGUGCGcuGCAGCCGg- -3'
miRNA:   3'- aaCGACaa--------CGCCGCGCu-CGUCGGCgg -5'
1581 3' -60.4 NC_001347.2 + 67624 0.67 0.718776
Target:  5'- -cGCUucagacGUguccaGCGGCaGCGAcauGCGGCCGCUg -3'
miRNA:   3'- aaCGA------CAa----CGCCG-CGCU---CGUCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.