miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1581 3' -60.4 NC_001347.2 + 153367 0.67 0.709195
Target:  5'- -aGCgucGUUcgcGCGGCGUGcGCAcGCCGCUc -3'
miRNA:   3'- aaCGa--CAA---CGCCGCGCuCGU-CGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 2322 0.67 0.709195
Target:  5'- -cGCUG--GCGGCG-GAGCuGUCGCa -3'
miRNA:   3'- aaCGACaaCGCCGCgCUCGuCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 157589 0.67 0.709195
Target:  5'- cUGCUGcgccgucUGCGGCucuacccgccCGAGCGGCUGCa -3'
miRNA:   3'- aACGACa------ACGCCGc---------GCUCGUCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 1901 0.67 0.737725
Target:  5'- gUGCUGcggcugGCuGGCGCuGGGCGcgguGCUGCCc -3'
miRNA:   3'- aACGACaa----CG-CCGCG-CUCGU----CGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 180033 0.67 0.736785
Target:  5'- -cGUUGUugagcauauguacUGUGGCgGCGGGCAGCauCGCg -3'
miRNA:   3'- aaCGACA-------------ACGCCG-CGCUCGUCG--GCGg -5'
1581 3' -60.4 NC_001347.2 + 89041 0.67 0.734903
Target:  5'- -aGCUGUcG-GGCGCGuuGCaacucuugcugcacGGCCGCCc -3'
miRNA:   3'- aaCGACAaCgCCGCGCu-CG--------------UCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 37947 0.67 0.728289
Target:  5'- gUGCaGgUGCaGCGCGucccagcGCGGCCGCUc -3'
miRNA:   3'- aACGaCaACGcCGCGCu------CGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 154814 0.67 0.728289
Target:  5'- gUGUcgaUGgccaGCGGCGCGcaCAGUCGCCg -3'
miRNA:   3'- aACG---ACaa--CGCCGCGCucGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 157200 0.67 0.718776
Target:  5'- -aGCUGgugaucggccGCGGUGCGcuGCAGCCGg- -3'
miRNA:   3'- aaCGACaa--------CGCCGCGCu-CGUCGGCgg -5'
1581 3' -60.4 NC_001347.2 + 67624 0.67 0.718776
Target:  5'- -cGCUucagacGUguccaGCGGCaGCGAcauGCGGCCGCUg -3'
miRNA:   3'- aaCGA------CAa----CGCCG-CGCU---CGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 12317 0.68 0.639891
Target:  5'- -gGCUGUUGCacugcgaGGCcaucuacgGCGAGCAaaugcgcacGCCGCUg -3'
miRNA:   3'- aaCGACAACG-------CCG--------CGCUCGU---------CGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 199768 0.68 0.650714
Target:  5'- -cGCUcgGUUucuugGCGGCGCc-GguGCCGCCg -3'
miRNA:   3'- aaCGA--CAA-----CGCCGCGcuCguCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 2370 0.68 0.660539
Target:  5'- -cGCUGgcGCugGGaCGCGAGUcggcgcccGCCGCCg -3'
miRNA:   3'- aaCGACaaCG--CC-GCGCUCGu-------CGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 77451 0.68 0.650714
Target:  5'- gUGCg--UGCuGCGCaAGCAGCUGCUc -3'
miRNA:   3'- aACGacaACGcCGCGcUCGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 88633 0.68 0.670344
Target:  5'- cUGCacc-GCGGCuuGAGCGGCgGCCu -3'
miRNA:   3'- aACGacaaCGCCGcgCUCGUCGgCGG- -5'
1581 3' -60.4 NC_001347.2 + 200601 0.68 0.670344
Target:  5'- aUGgaGuUUGCGcGCGuCGGGCuGCgCGCCg -3'
miRNA:   3'- aACgaC-AACGC-CGC-GCUCGuCG-GCGG- -5'
1581 3' -60.4 NC_001347.2 + 62764 0.68 0.689858
Target:  5'- -aGCg---GCGGC-CGAccccgccguuGCGGCCGCCg -3'
miRNA:   3'- aaCGacaaCGCCGcGCU----------CGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 37983 0.68 0.680119
Target:  5'- cUGCUc--GCGGUccagcucggGC-AGCAGCCGCCg -3'
miRNA:   3'- aACGAcaaCGCCG---------CGcUCGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 85966 0.68 0.670344
Target:  5'- -cGCgaacccgUGUaGUGCGAGCcGCCGCCa -3'
miRNA:   3'- aaCGaca----ACGcCGCGCUCGuCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 87638 0.68 0.689858
Target:  5'- cUGCUGUUGCu-CGCcAGCGGCgCGCg -3'
miRNA:   3'- aACGACAACGccGCGcUCGUCG-GCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.