Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 199343 | 0.69 | 0.591724 |
Target: 5'- -cGUUGagGCGGCG-GAGguGCUGCa -3' miRNA: 3'- aaCGACaaCGCCGCgCUCguCGGCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 174978 | 0.69 | 0.580975 |
Target: 5'- gUGCUGcagguauUUGUGGUGCGGGCcguGCCGgUg -3' miRNA: 3'- aACGAC-------AACGCCGCGCUCGu--CGGCgG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 111996 | 0.69 | 0.611348 |
Target: 5'- -aGCUGcgGCGGCuuGGGCAGCaGCg -3' miRNA: 3'- aaCGACaaCGCCGcgCUCGUCGgCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 2430 | 0.69 | 0.621185 |
Target: 5'- -aGCUGgaccGCGagcaGUGgGAGCGGCCGCg -3' miRNA: 3'- aaCGACaa--CGC----CGCgCUCGUCGGCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 85966 | 0.68 | 0.670344 |
Target: 5'- -cGCgaacccgUGUaGUGCGAGCcGCCGCCa -3' miRNA: 3'- aaCGaca----ACGcCGCGCUCGuCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 37983 | 0.68 | 0.680119 |
Target: 5'- cUGCUc--GCGGUccagcucggGC-AGCAGCCGCCg -3' miRNA: 3'- aACGAcaaCGCCG---------CGcUCGUCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 200601 | 0.68 | 0.670344 |
Target: 5'- aUGgaGuUUGCGcGCGuCGGGCuGCgCGCCg -3' miRNA: 3'- aACgaC-AACGC-CGC-GCUCGuCG-GCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 88633 | 0.68 | 0.670344 |
Target: 5'- cUGCacc-GCGGCuuGAGCGGCgGCCu -3' miRNA: 3'- aACGacaaCGCCGcgCUCGUCGgCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 77451 | 0.68 | 0.650714 |
Target: 5'- gUGCg--UGCuGCGCaAGCAGCUGCUc -3' miRNA: 3'- aACGacaACGcCGCGcUCGUCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 2370 | 0.68 | 0.660539 |
Target: 5'- -cGCUGgcGCugGGaCGCGAGUcggcgcccGCCGCCg -3' miRNA: 3'- aaCGACaaCG--CC-GCGCUCGu-------CGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 199768 | 0.68 | 0.650714 |
Target: 5'- -cGCUcgGUUucuugGCGGCGCc-GguGCCGCCg -3' miRNA: 3'- aaCGA--CAA-----CGCCGCGcuCguCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 87638 | 0.68 | 0.689858 |
Target: 5'- cUGCUGUUGCu-CGCcAGCGGCgCGCg -3' miRNA: 3'- aACGACAACGccGCGcUCGUCG-GCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 12317 | 0.68 | 0.639891 |
Target: 5'- -gGCUGUUGCacugcgaGGCcaucuacgGCGAGCAaaugcgcacGCCGCUg -3' miRNA: 3'- aaCGACAACG-------CCG--------CGCUCGU---------CGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 62764 | 0.68 | 0.689858 |
Target: 5'- -aGCg---GCGGC-CGAccccgccguuGCGGCCGCCg -3' miRNA: 3'- aaCGacaaCGCCGcGCU----------CGUCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 39681 | 0.67 | 0.699553 |
Target: 5'- -aGCgacgUGCacGGCGCGuGCuggcGCCGCCu -3' miRNA: 3'- aaCGaca-ACG--CCGCGCuCGu---CGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 47077 | 0.67 | 0.699553 |
Target: 5'- -aGCUGcgGCGGCGa-AGaCAGCUGCg -3' miRNA: 3'- aaCGACaaCGCCGCgcUC-GUCGGCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 77862 | 0.67 | 0.699553 |
Target: 5'- cUGCUGcagGUGGC-CGAGCgccuGGgCGCCg -3' miRNA: 3'- aACGACaa-CGCCGcGCUCG----UCgGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 75841 | 0.67 | 0.699553 |
Target: 5'- -aGUUGUUGUGGCaaCGAcGuCGGCCGCg -3' miRNA: 3'- aaCGACAACGCCGc-GCU-C-GUCGGCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 209056 | 0.67 | 0.699553 |
Target: 5'- -cGCgGUUGCGGuCGCGcacCGGCUGCa -3' miRNA: 3'- aaCGaCAACGCC-GCGCuc-GUCGGCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 180033 | 0.67 | 0.736785 |
Target: 5'- -cGUUGUugagcauauguacUGUGGCgGCGGGCAGCauCGCg -3' miRNA: 3'- aaCGACA-------------ACGCCG-CGCUCGUCG--GCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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