miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1581 3' -60.4 NC_001347.2 + 180033 0.67 0.736785
Target:  5'- -cGUUGUugagcauauguacUGUGGCgGCGGGCAGCauCGCg -3'
miRNA:   3'- aaCGACA-------------ACGCCG-CGCUCGUCG--GCGg -5'
1581 3' -60.4 NC_001347.2 + 157589 0.67 0.709195
Target:  5'- cUGCUGcgccgucUGCGGCucuacccgccCGAGCGGCUGCa -3'
miRNA:   3'- aACGACa------ACGCCGc---------GCUCGUCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 2322 0.67 0.709195
Target:  5'- -cGCUG--GCGGCG-GAGCuGUCGCa -3'
miRNA:   3'- aaCGACaaCGCCGCgCUCGuCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 153367 0.67 0.709195
Target:  5'- -aGCgucGUUcgcGCGGCGUGcGCAcGCCGCUc -3'
miRNA:   3'- aaCGa--CAA---CGCCGCGCuCGU-CGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 109474 0.67 0.709195
Target:  5'- -gGCg---GCGGCGCcauGGCGGgCGCCu -3'
miRNA:   3'- aaCGacaaCGCCGCGc--UCGUCgGCGG- -5'
1581 3' -60.4 NC_001347.2 + 209056 0.67 0.699553
Target:  5'- -cGCgGUUGCGGuCGCGcacCGGCUGCa -3'
miRNA:   3'- aaCGaCAACGCC-GCGCuc-GUCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 152231 0.67 0.709195
Target:  5'- gUGCUGccGCGGCGCuuGCacuuggAGCCGgCu -3'
miRNA:   3'- aACGACaaCGCCGCGcuCG------UCGGCgG- -5'
1581 3' -60.4 NC_001347.2 + 75841 0.67 0.699553
Target:  5'- -aGUUGUUGUGGCaaCGAcGuCGGCCGCg -3'
miRNA:   3'- aaCGACAACGCCGc-GCU-C-GUCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 77862 0.67 0.699553
Target:  5'- cUGCUGcagGUGGC-CGAGCgccuGGgCGCCg -3'
miRNA:   3'- aACGACaa-CGCCGcGCUCG----UCgGCGG- -5'
1581 3' -60.4 NC_001347.2 + 39681 0.67 0.699553
Target:  5'- -aGCgacgUGCacGGCGCGuGCuggcGCCGCCu -3'
miRNA:   3'- aaCGaca-ACG--CCGCGCuCGu---CGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 47077 0.67 0.699553
Target:  5'- -aGCUGcgGCGGCGa-AGaCAGCUGCg -3'
miRNA:   3'- aaCGACaaCGCCGCgcUC-GUCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 88038 0.66 0.76549
Target:  5'- -cGCUGa-GCGGCuGCGGaauGCGGCCcggGCCc -3'
miRNA:   3'- aaCGACaaCGCCG-CGCU---CGUCGG---CGG- -5'
1581 3' -60.4 NC_001347.2 + 63102 0.66 0.783465
Target:  5'- gUGCcGccGUGGcCGCc-GCGGCCGCCg -3'
miRNA:   3'- aACGaCaaCGCC-GCGcuCGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 128444 0.66 0.779909
Target:  5'- cUGCUGcguggccgucaaGCGGCGCGA-CGGCgCGCg -3'
miRNA:   3'- aACGACaa----------CGCCGCGCUcGUCG-GCGg -5'
1581 3' -60.4 NC_001347.2 + 162341 0.66 0.76549
Target:  5'- gUUGaCUGcUGCGGUaGCGuGCAaaGUCGCCc -3'
miRNA:   3'- -AAC-GACaACGCCG-CGCuCGU--CGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 159465 0.66 0.76458
Target:  5'- -cGCUcgaugacGaUGuCGGCGCG-GCGGCUGCUg -3'
miRNA:   3'- aaCGA-------CaAC-GCCGCGCuCGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 157829 0.66 0.756334
Target:  5'- -cGCaGUUGCGGgGCcucaucGCAGCCuugcGCCg -3'
miRNA:   3'- aaCGaCAACGCCgCGcu----CGUCGG----CGG- -5'
1581 3' -60.4 NC_001347.2 + 158669 0.66 0.756334
Target:  5'- -cGCUGUgucGgGGCGCGcGCugguuaaacAGaCCGCCu -3'
miRNA:   3'- aaCGACAa--CgCCGCGCuCG---------UC-GGCGG- -5'
1581 3' -60.4 NC_001347.2 + 168516 0.66 0.762755
Target:  5'- -aGCUGUUcgugcaacugcucgGCGGCguacaGCGGGUcGCgCGCCg -3'
miRNA:   3'- aaCGACAA--------------CGCCG-----CGCUCGuCG-GCGG- -5'
1581 3' -60.4 NC_001347.2 + 25903 0.66 0.774537
Target:  5'- -cGCUGgaaCGcGCGCuuuuGGCGGCCGUCa -3'
miRNA:   3'- aaCGACaacGC-CGCGc---UCGUCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.