Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 159465 | 0.66 | 0.76458 |
Target: 5'- -cGCUcgaugacGaUGuCGGCGCG-GCGGCUGCUg -3' miRNA: 3'- aaCGA-------CaAC-GCCGCGCuCGUCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 158669 | 0.66 | 0.756334 |
Target: 5'- -cGCUGUgucGgGGCGCGcGCugguuaaacAGaCCGCCu -3' miRNA: 3'- aaCGACAa--CgCCGCGCuCG---------UC-GGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 168516 | 0.66 | 0.762755 |
Target: 5'- -aGCUGUUcgugcaacugcucgGCGGCguacaGCGGGUcGCgCGCCg -3' miRNA: 3'- aaCGACAA--------------CGCCG-----CGCUCGuCG-GCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 157829 | 0.66 | 0.756334 |
Target: 5'- -cGCaGUUGCGGgGCcucaucGCAGCCuugcGCCg -3' miRNA: 3'- aaCGaCAACGCCgCGcu----CGUCGG----CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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