miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1581 3' -60.4 NC_001347.2 + 185119 1.09 0.001377
Target:  5'- gUUGCUGUUGCGGCGCGAGCAGCCGCCg -3'
miRNA:   3'- -AACGACAACGCCGCGCUCGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 206992 0.74 0.323439
Target:  5'- -cGCUGguaucgaUGCGGCagGCGAaugcGCAGCCGCUg -3'
miRNA:   3'- aaCGACa------ACGCCG--CGCU----CGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 118276 0.74 0.344442
Target:  5'- gUGCgGUUcgaagaaGaCGGCGaCGGGUAGCCGCCa -3'
miRNA:   3'- aACGaCAA-------C-GCCGC-GCUCGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 105938 0.73 0.367958
Target:  5'- cUGCUGaUGCGGCuggaccGCGAGCgcagcgucggcgAGCCGCg -3'
miRNA:   3'- aACGACaACGCCG------CGCUCG------------UCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 142588 0.73 0.407316
Target:  5'- -aGCgGggGCGGCGgGGGCAGCggguuauUGCCg -3'
miRNA:   3'- aaCGaCaaCGCCGCgCUCGUCG-------GCGG- -5'
1581 3' -60.4 NC_001347.2 + 182283 0.72 0.416507
Target:  5'- -cGCUGaccaUGCGGCGUcguugccgGGGCGGCUGCUc -3'
miRNA:   3'- aaCGACa---ACGCCGCG--------CUCGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 156634 0.72 0.42412
Target:  5'- -cGCUG--GCGGCGCcgcugccGGGCcucGGCCGCCg -3'
miRNA:   3'- aaCGACaaCGCCGCG-------CUCG---UCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 148614 0.72 0.424972
Target:  5'- -gGCgg-UGCGGuCGCGGGUGGCCGgCg -3'
miRNA:   3'- aaCGacaACGCC-GCGCUCGUCGGCgG- -5'
1581 3' -60.4 NC_001347.2 + 100871 0.71 0.468775
Target:  5'- -aGCcGagGCGGCGCGGcGCAG-CGCCg -3'
miRNA:   3'- aaCGaCaaCGCCGCGCU-CGUCgGCGG- -5'
1581 3' -60.4 NC_001347.2 + 170351 0.71 0.496139
Target:  5'- -cGCUuUUGCGGCGUacagGAGCcggcgcgggAGCUGCCg -3'
miRNA:   3'- aaCGAcAACGCCGCG----CUCG---------UCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 149871 0.71 0.514777
Target:  5'- cUGCaaGUUGCcuacGGCGCaGGGCGGCCGUUu -3'
miRNA:   3'- aACGa-CAACG----CCGCG-CUCGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 76164 0.7 0.524203
Target:  5'- -aGggGUUGCGGauggaGCuGGGCGGCCGCa -3'
miRNA:   3'- aaCgaCAACGCCg----CG-CUCGUCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 17331 0.7 0.524203
Target:  5'- -cGCgGUUGCcGCGCGuauGGCCGCCg -3'
miRNA:   3'- aaCGaCAACGcCGCGCucgUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 192191 0.7 0.533694
Target:  5'- -aGCgGccGCGGCGCGGGCucggcgucCCGCCg -3'
miRNA:   3'- aaCGaCaaCGCCGCGCUCGuc------GGCGG- -5'
1581 3' -60.4 NC_001347.2 + 99999 0.7 0.543244
Target:  5'- -cGCgGgcGCGGuCGCGAuGCAGCUgaGCCa -3'
miRNA:   3'- aaCGaCaaCGCC-GCGCU-CGUCGG--CGG- -5'
1581 3' -60.4 NC_001347.2 + 59110 0.7 0.552851
Target:  5'- cUGCUGagcUGCGGCcaucaGAGCAGCgGCg -3'
miRNA:   3'- aACGACa--ACGCCGcg---CUCGUCGgCGg -5'
1581 3' -60.4 NC_001347.2 + 184949 0.7 0.562508
Target:  5'- -aGCUcGUcgGcCGGCGUGGGCGGCuCGCg -3'
miRNA:   3'- aaCGA-CAa-C-GCCGCGCUCGUCG-GCGg -5'
1581 3' -60.4 NC_001347.2 + 159286 0.7 0.572209
Target:  5'- gUGCUG--GCGGCGcCGGGC-GCCacgGCCa -3'
miRNA:   3'- aACGACaaCGCCGC-GCUCGuCGG---CGG- -5'
1581 3' -60.4 NC_001347.2 + 174978 0.69 0.580975
Target:  5'- gUGCUGcagguauUUGUGGUGCGGGCcguGCCGgUg -3'
miRNA:   3'- aACGAC-------AACGCCGCGCUCGu--CGGCgG- -5'
1581 3' -60.4 NC_001347.2 + 199343 0.69 0.591724
Target:  5'- -cGUUGagGCGGCG-GAGguGCUGCa -3'
miRNA:   3'- aaCGACaaCGCCGCgCUCguCGGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.