Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 173956 | 0.66 | 0.792269 |
Target: 5'- -aGCaaaagUGCGGCuaGAGCgcgGGCCGCg -3' miRNA: 3'- aaCGaca--ACGCCGcgCUCG---UCGGCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 77761 | 0.66 | 0.792269 |
Target: 5'- -aGCgag-GCGGC-CGAGCGGgCGCa -3' miRNA: 3'- aaCGacaaCGCCGcGCUCGUCgGCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 222751 | 0.66 | 0.792269 |
Target: 5'- -cGCUGccGCGGCcauuGCcGCCGCCg -3' miRNA: 3'- aaCGACaaCGCCGcgcuCGuCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 173420 | 0.66 | 0.800938 |
Target: 5'- -cGCUGUUGUa-CGUGGcCAGCCGCa -3' miRNA: 3'- aaCGACAACGccGCGCUcGUCGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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