miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1581 3' -60.4 NC_001347.2 + 109474 0.67 0.709195
Target:  5'- -gGCg---GCGGCGCcauGGCGGgCGCCu -3'
miRNA:   3'- aaCGacaaCGCCGCGc--UCGUCgGCGG- -5'
1581 3' -60.4 NC_001347.2 + 152231 0.67 0.709195
Target:  5'- gUGCUGccGCGGCGCuuGCacuuggAGCCGgCu -3'
miRNA:   3'- aACGACaaCGCCGCGcuCG------UCGGCgG- -5'
1581 3' -60.4 NC_001347.2 + 153367 0.67 0.709195
Target:  5'- -aGCgucGUUcgcGCGGCGUGcGCAcGCCGCUc -3'
miRNA:   3'- aaCGa--CAA---CGCCGCGCuCGU-CGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 2322 0.67 0.709195
Target:  5'- -cGCUG--GCGGCG-GAGCuGUCGCa -3'
miRNA:   3'- aaCGACaaCGCCGCgCUCGuCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 157589 0.67 0.709195
Target:  5'- cUGCUGcgccgucUGCGGCucuacccgccCGAGCGGCUGCa -3'
miRNA:   3'- aACGACa------ACGCCGc---------GCUCGUCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 209056 0.67 0.699553
Target:  5'- -cGCgGUUGCGGuCGCGcacCGGCUGCa -3'
miRNA:   3'- aaCGaCAACGCC-GCGCuc-GUCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 75841 0.67 0.699553
Target:  5'- -aGUUGUUGUGGCaaCGAcGuCGGCCGCg -3'
miRNA:   3'- aaCGACAACGCCGc-GCU-C-GUCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 77862 0.67 0.699553
Target:  5'- cUGCUGcagGUGGC-CGAGCgccuGGgCGCCg -3'
miRNA:   3'- aACGACaa-CGCCGcGCUCG----UCgGCGG- -5'
1581 3' -60.4 NC_001347.2 + 47077 0.67 0.699553
Target:  5'- -aGCUGcgGCGGCGa-AGaCAGCUGCg -3'
miRNA:   3'- aaCGACaaCGCCGCgcUC-GUCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 39681 0.67 0.699553
Target:  5'- -aGCgacgUGCacGGCGCGuGCuggcGCCGCCu -3'
miRNA:   3'- aaCGaca-ACG--CCGCGCuCGu---CGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 87638 0.68 0.689858
Target:  5'- cUGCUGUUGCu-CGCcAGCGGCgCGCg -3'
miRNA:   3'- aACGACAACGccGCGcUCGUCG-GCGg -5'
1581 3' -60.4 NC_001347.2 + 62764 0.68 0.689858
Target:  5'- -aGCg---GCGGC-CGAccccgccguuGCGGCCGCCg -3'
miRNA:   3'- aaCGacaaCGCCGcGCU----------CGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 37983 0.68 0.680119
Target:  5'- cUGCUc--GCGGUccagcucggGC-AGCAGCCGCCg -3'
miRNA:   3'- aACGAcaaCGCCG---------CGcUCGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 85966 0.68 0.670344
Target:  5'- -cGCgaacccgUGUaGUGCGAGCcGCCGCCa -3'
miRNA:   3'- aaCGaca----ACGcCGCGCUCGuCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 200601 0.68 0.670344
Target:  5'- aUGgaGuUUGCGcGCGuCGGGCuGCgCGCCg -3'
miRNA:   3'- aACgaC-AACGC-CGC-GCUCGuCG-GCGG- -5'
1581 3' -60.4 NC_001347.2 + 88633 0.68 0.670344
Target:  5'- cUGCacc-GCGGCuuGAGCGGCgGCCu -3'
miRNA:   3'- aACGacaaCGCCGcgCUCGUCGgCGG- -5'
1581 3' -60.4 NC_001347.2 + 2370 0.68 0.660539
Target:  5'- -cGCUGgcGCugGGaCGCGAGUcggcgcccGCCGCCg -3'
miRNA:   3'- aaCGACaaCG--CC-GCGCUCGu-------CGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 77451 0.68 0.650714
Target:  5'- gUGCg--UGCuGCGCaAGCAGCUGCUc -3'
miRNA:   3'- aACGacaACGcCGCGcUCGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 199768 0.68 0.650714
Target:  5'- -cGCUcgGUUucuugGCGGCGCc-GguGCCGCCg -3'
miRNA:   3'- aaCGA--CAA-----CGCCGCGcuCguCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 12317 0.68 0.639891
Target:  5'- -gGCUGUUGCacugcgaGGCcaucuacgGCGAGCAaaugcgcacGCCGCUg -3'
miRNA:   3'- aaCGACAACG-------CCG--------CGCUCGU---------CGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.