miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1581 3' -60.4 NC_001347.2 + 1901 0.67 0.737725
Target:  5'- gUGCUGcggcugGCuGGCGCuGGGCGcgguGCUGCCc -3'
miRNA:   3'- aACGACaa----CG-CCGCG-CUCGU----CGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 2322 0.67 0.709195
Target:  5'- -cGCUG--GCGGCG-GAGCuGUCGCa -3'
miRNA:   3'- aaCGACaaCGCCGCgCUCGuCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 2370 0.68 0.660539
Target:  5'- -cGCUGgcGCugGGaCGCGAGUcggcgcccGCCGCCg -3'
miRNA:   3'- aaCGACaaCG--CC-GCGCUCGu-------CGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 2430 0.69 0.621185
Target:  5'- -aGCUGgaccGCGagcaGUGgGAGCGGCCGCg -3'
miRNA:   3'- aaCGACaa--CGC----CGCgCUCGUCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 8356 0.69 0.621185
Target:  5'- gUGC-GUUuCGGCGcCGuGCAGuuGCCg -3'
miRNA:   3'- aACGaCAAcGCCGC-GCuCGUCggCGG- -5'
1581 3' -60.4 NC_001347.2 + 12317 0.68 0.639891
Target:  5'- -gGCUGUUGCacugcgaGGCcaucuacgGCGAGCAaaugcgcacGCCGCUg -3'
miRNA:   3'- aaCGACAACG-------CCG--------CGCUCGU---------CGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 17331 0.7 0.524203
Target:  5'- -cGCgGUUGCcGCGCGuauGGCCGCCg -3'
miRNA:   3'- aaCGaCAACGcCGCGCucgUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 25903 0.66 0.774537
Target:  5'- -cGCUGgaaCGcGCGCuuuuGGCGGCCGUCa -3'
miRNA:   3'- aaCGACaacGC-CGCGc---UCGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 37947 0.67 0.728289
Target:  5'- gUGCaGgUGCaGCGCGucccagcGCGGCCGCUc -3'
miRNA:   3'- aACGaCaACGcCGCGCu------CGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 37983 0.68 0.680119
Target:  5'- cUGCUc--GCGGUccagcucggGC-AGCAGCCGCCg -3'
miRNA:   3'- aACGAcaaCGCCG---------CGcUCGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 39681 0.67 0.699553
Target:  5'- -aGCgacgUGCacGGCGCGuGCuggcGCCGCCu -3'
miRNA:   3'- aaCGaca-ACG--CCGCGCuCGu---CGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 47077 0.67 0.699553
Target:  5'- -aGCUGcgGCGGCGa-AGaCAGCUGCg -3'
miRNA:   3'- aaCGACaaCGCCGCgcUC-GUCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 59110 0.7 0.552851
Target:  5'- cUGCUGagcUGCGGCcaucaGAGCAGCgGCg -3'
miRNA:   3'- aACGACa--ACGCCGcg---CUCGUCGgCGg -5'
1581 3' -60.4 NC_001347.2 + 62764 0.68 0.689858
Target:  5'- -aGCg---GCGGC-CGAccccgccguuGCGGCCGCCg -3'
miRNA:   3'- aaCGacaaCGCCGcGCU----------CGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 63102 0.66 0.783465
Target:  5'- gUGCcGccGUGGcCGCc-GCGGCCGCCg -3'
miRNA:   3'- aACGaCaaCGCC-GCGcuCGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 67624 0.67 0.718776
Target:  5'- -cGCUucagacGUguccaGCGGCaGCGAcauGCGGCCGCUg -3'
miRNA:   3'- aaCGA------CAa----CGCCG-CGCU---CGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 75841 0.67 0.699553
Target:  5'- -aGUUGUUGUGGCaaCGAcGuCGGCCGCg -3'
miRNA:   3'- aaCGACAACGCCGc-GCU-C-GUCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 76164 0.7 0.524203
Target:  5'- -aGggGUUGCGGauggaGCuGGGCGGCCGCa -3'
miRNA:   3'- aaCgaCAACGCCg----CG-CUCGUCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 77451 0.68 0.650714
Target:  5'- gUGCg--UGCuGCGCaAGCAGCUGCUc -3'
miRNA:   3'- aACGacaACGcCGCGcUCGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 77761 0.66 0.792269
Target:  5'- -aGCgag-GCGGC-CGAGCGGgCGCa -3'
miRNA:   3'- aaCGacaaCGCCGcGCUCGUCgGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.