Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 157063 | 0.69 | 0.611348 |
Target: 5'- gUGCUGgcucugcUGUGGCGCGgucauGGCcAGUCGUCg -3' miRNA: 3'- aACGACa------ACGCCGCGC-----UCG-UCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 157200 | 0.67 | 0.718776 |
Target: 5'- -aGCUGgugaucggccGCGGUGCGcuGCAGCCGg- -3' miRNA: 3'- aaCGACaa--------CGCCGCGCu-CGUCGGCgg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 157589 | 0.67 | 0.709195 |
Target: 5'- cUGCUGcgccgucUGCGGCucuacccgccCGAGCGGCUGCa -3' miRNA: 3'- aACGACa------ACGCCGc---------GCUCGUCGGCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 157829 | 0.66 | 0.756334 |
Target: 5'- -cGCaGUUGCGGgGCcucaucGCAGCCuugcGCCg -3' miRNA: 3'- aaCGaCAACGCCgCGcu----CGUCGG----CGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 158669 | 0.66 | 0.756334 |
Target: 5'- -cGCUGUgucGgGGCGCGcGCugguuaaacAGaCCGCCu -3' miRNA: 3'- aaCGACAa--CgCCGCGCuCG---------UC-GGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 159286 | 0.7 | 0.572209 |
Target: 5'- gUGCUG--GCGGCGcCGGGC-GCCacgGCCa -3' miRNA: 3'- aACGACaaCGCCGC-GCUCGuCGG---CGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 159465 | 0.66 | 0.76458 |
Target: 5'- -cGCUcgaugacGaUGuCGGCGCG-GCGGCUGCUg -3' miRNA: 3'- aaCGA-------CaAC-GCCGCGCuCGUCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 162341 | 0.66 | 0.76549 |
Target: 5'- gUUGaCUGcUGCGGUaGCGuGCAaaGUCGCCc -3' miRNA: 3'- -AAC-GACaACGCCG-CGCuCGU--CGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 168516 | 0.66 | 0.762755 |
Target: 5'- -aGCUGUUcgugcaacugcucgGCGGCguacaGCGGGUcGCgCGCCg -3' miRNA: 3'- aaCGACAA--------------CGCCG-----CGCUCGuCG-GCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 170351 | 0.71 | 0.496139 |
Target: 5'- -cGCUuUUGCGGCGUacagGAGCcggcgcgggAGCUGCCg -3' miRNA: 3'- aaCGAcAACGCCGCG----CUCG---------UCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 173420 | 0.66 | 0.800938 |
Target: 5'- -cGCUGUUGUa-CGUGGcCAGCCGCa -3' miRNA: 3'- aaCGACAACGccGCGCUcGUCGGCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 173956 | 0.66 | 0.792269 |
Target: 5'- -aGCaaaagUGCGGCuaGAGCgcgGGCCGCg -3' miRNA: 3'- aaCGaca--ACGCCGcgCUCG---UCGGCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 174978 | 0.69 | 0.580975 |
Target: 5'- gUGCUGcagguauUUGUGGUGCGGGCcguGCCGgUg -3' miRNA: 3'- aACGAC-------AACGCCGCGCUCGu--CGGCgG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 180033 | 0.67 | 0.736785 |
Target: 5'- -cGUUGUugagcauauguacUGUGGCgGCGGGCAGCauCGCg -3' miRNA: 3'- aaCGACA-------------ACGCCG-CGCUCGUCG--GCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 182283 | 0.72 | 0.416507 |
Target: 5'- -cGCUGaccaUGCGGCGUcguugccgGGGCGGCUGCUc -3' miRNA: 3'- aaCGACa---ACGCCGCG--------CUCGUCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 184949 | 0.7 | 0.562508 |
Target: 5'- -aGCUcGUcgGcCGGCGUGGGCGGCuCGCg -3' miRNA: 3'- aaCGA-CAa-C-GCCGCGCUCGUCG-GCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 185119 | 1.09 | 0.001377 |
Target: 5'- gUUGCUGUUGCGGCGCGAGCAGCCGCCg -3' miRNA: 3'- -AACGACAACGCCGCGCUCGUCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 192191 | 0.7 | 0.533694 |
Target: 5'- -aGCgGccGCGGCGCGGGCucggcgucCCGCCg -3' miRNA: 3'- aaCGaCaaCGCCGCGCUCGuc------GGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 199343 | 0.69 | 0.591724 |
Target: 5'- -cGUUGagGCGGCG-GAGguGCUGCa -3' miRNA: 3'- aaCGACaaCGCCGCgCUCguCGGCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 199768 | 0.68 | 0.650714 |
Target: 5'- -cGCUcgGUUucuugGCGGCGCc-GguGCCGCCg -3' miRNA: 3'- aaCGA--CAA-----CGCCGCGcuCguCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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