miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1581 3' -60.4 NC_001347.2 + 222751 0.66 0.792269
Target:  5'- -cGCUGccGCGGCcauuGCcGCCGCCg -3'
miRNA:   3'- aaCGACaaCGCCGcgcuCGuCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 209056 0.67 0.699553
Target:  5'- -cGCgGUUGCGGuCGCGcacCGGCUGCa -3'
miRNA:   3'- aaCGaCAACGCC-GCGCuc-GUCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 206992 0.74 0.323439
Target:  5'- -cGCUGguaucgaUGCGGCagGCGAaugcGCAGCCGCUg -3'
miRNA:   3'- aaCGACa------ACGCCG--CGCU----CGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 200601 0.68 0.670344
Target:  5'- aUGgaGuUUGCGcGCGuCGGGCuGCgCGCCg -3'
miRNA:   3'- aACgaC-AACGC-CGC-GCUCGuCG-GCGG- -5'
1581 3' -60.4 NC_001347.2 + 199768 0.68 0.650714
Target:  5'- -cGCUcgGUUucuugGCGGCGCc-GguGCCGCCg -3'
miRNA:   3'- aaCGA--CAA-----CGCCGCGcuCguCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 199343 0.69 0.591724
Target:  5'- -cGUUGagGCGGCG-GAGguGCUGCa -3'
miRNA:   3'- aaCGACaaCGCCGCgCUCguCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 192191 0.7 0.533694
Target:  5'- -aGCgGccGCGGCGCGGGCucggcgucCCGCCg -3'
miRNA:   3'- aaCGaCaaCGCCGCGCUCGuc------GGCGG- -5'
1581 3' -60.4 NC_001347.2 + 185119 1.09 0.001377
Target:  5'- gUUGCUGUUGCGGCGCGAGCAGCCGCCg -3'
miRNA:   3'- -AACGACAACGCCGCGCUCGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 184949 0.7 0.562508
Target:  5'- -aGCUcGUcgGcCGGCGUGGGCGGCuCGCg -3'
miRNA:   3'- aaCGA-CAa-C-GCCGCGCUCGUCG-GCGg -5'
1581 3' -60.4 NC_001347.2 + 182283 0.72 0.416507
Target:  5'- -cGCUGaccaUGCGGCGUcguugccgGGGCGGCUGCUc -3'
miRNA:   3'- aaCGACa---ACGCCGCG--------CUCGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 180033 0.67 0.736785
Target:  5'- -cGUUGUugagcauauguacUGUGGCgGCGGGCAGCauCGCg -3'
miRNA:   3'- aaCGACA-------------ACGCCG-CGCUCGUCG--GCGg -5'
1581 3' -60.4 NC_001347.2 + 174978 0.69 0.580975
Target:  5'- gUGCUGcagguauUUGUGGUGCGGGCcguGCCGgUg -3'
miRNA:   3'- aACGAC-------AACGCCGCGCUCGu--CGGCgG- -5'
1581 3' -60.4 NC_001347.2 + 173956 0.66 0.792269
Target:  5'- -aGCaaaagUGCGGCuaGAGCgcgGGCCGCg -3'
miRNA:   3'- aaCGaca--ACGCCGcgCUCG---UCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 173420 0.66 0.800938
Target:  5'- -cGCUGUUGUa-CGUGGcCAGCCGCa -3'
miRNA:   3'- aaCGACAACGccGCGCUcGUCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 170351 0.71 0.496139
Target:  5'- -cGCUuUUGCGGCGUacagGAGCcggcgcgggAGCUGCCg -3'
miRNA:   3'- aaCGAcAACGCCGCG----CUCG---------UCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 168516 0.66 0.762755
Target:  5'- -aGCUGUUcgugcaacugcucgGCGGCguacaGCGGGUcGCgCGCCg -3'
miRNA:   3'- aaCGACAA--------------CGCCG-----CGCUCGuCG-GCGG- -5'
1581 3' -60.4 NC_001347.2 + 162341 0.66 0.76549
Target:  5'- gUUGaCUGcUGCGGUaGCGuGCAaaGUCGCCc -3'
miRNA:   3'- -AAC-GACaACGCCG-CGCuCGU--CGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 159465 0.66 0.76458
Target:  5'- -cGCUcgaugacGaUGuCGGCGCG-GCGGCUGCUg -3'
miRNA:   3'- aaCGA-------CaAC-GCCGCGCuCGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 159286 0.7 0.572209
Target:  5'- gUGCUG--GCGGCGcCGGGC-GCCacgGCCa -3'
miRNA:   3'- aACGACaaCGCCGC-GCUCGuCGG---CGG- -5'
1581 3' -60.4 NC_001347.2 + 158669 0.66 0.756334
Target:  5'- -cGCUGUgucGgGGCGCGcGCugguuaaacAGaCCGCCu -3'
miRNA:   3'- aaCGACAa--CgCCGCGCuCG---------UC-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.