miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1581 3' -60.4 NC_001347.2 + 157829 0.66 0.756334
Target:  5'- -cGCaGUUGCGGgGCcucaucGCAGCCuugcGCCg -3'
miRNA:   3'- aaCGaCAACGCCgCGcu----CGUCGG----CGG- -5'
1581 3' -60.4 NC_001347.2 + 157589 0.67 0.709195
Target:  5'- cUGCUGcgccgucUGCGGCucuacccgccCGAGCGGCUGCa -3'
miRNA:   3'- aACGACa------ACGCCGc---------GCUCGUCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 157200 0.67 0.718776
Target:  5'- -aGCUGgugaucggccGCGGUGCGcuGCAGCCGg- -3'
miRNA:   3'- aaCGACaa--------CGCCGCGCu-CGUCGGCgg -5'
1581 3' -60.4 NC_001347.2 + 157063 0.69 0.611348
Target:  5'- gUGCUGgcucugcUGUGGCGCGgucauGGCcAGUCGUCg -3'
miRNA:   3'- aACGACa------ACGCCGCGC-----UCG-UCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 156634 0.72 0.42412
Target:  5'- -cGCUG--GCGGCGCcgcugccGGGCcucGGCCGCCg -3'
miRNA:   3'- aaCGACaaCGCCGCG-------CUCG---UCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 154814 0.67 0.728289
Target:  5'- gUGUcgaUGgccaGCGGCGCGcaCAGUCGCCg -3'
miRNA:   3'- aACG---ACaa--CGCCGCGCucGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 153367 0.67 0.709195
Target:  5'- -aGCgucGUUcgcGCGGCGUGcGCAcGCCGCUc -3'
miRNA:   3'- aaCGa--CAA---CGCCGCGCuCGU-CGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 152231 0.67 0.709195
Target:  5'- gUGCUGccGCGGCGCuuGCacuuggAGCCGgCu -3'
miRNA:   3'- aACGACaaCGCCGCGcuCG------UCGGCgG- -5'
1581 3' -60.4 NC_001347.2 + 149871 0.71 0.514777
Target:  5'- cUGCaaGUUGCcuacGGCGCaGGGCGGCCGUUu -3'
miRNA:   3'- aACGa-CAACG----CCGCG-CUCGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 148614 0.72 0.424972
Target:  5'- -gGCgg-UGCGGuCGCGGGUGGCCGgCg -3'
miRNA:   3'- aaCGacaACGCC-GCGCUCGUCGGCgG- -5'
1581 3' -60.4 NC_001347.2 + 142588 0.73 0.407316
Target:  5'- -aGCgGggGCGGCGgGGGCAGCggguuauUGCCg -3'
miRNA:   3'- aaCGaCaaCGCCGCgCUCGUCG-------GCGG- -5'
1581 3' -60.4 NC_001347.2 + 128444 0.66 0.779909
Target:  5'- cUGCUGcguggccgucaaGCGGCGCGA-CGGCgCGCg -3'
miRNA:   3'- aACGACaa----------CGCCGCGCUcGUCG-GCGg -5'
1581 3' -60.4 NC_001347.2 + 118276 0.74 0.344442
Target:  5'- gUGCgGUUcgaagaaGaCGGCGaCGGGUAGCCGCCa -3'
miRNA:   3'- aACGaCAA-------C-GCCGC-GCUCGUCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 111996 0.69 0.611348
Target:  5'- -aGCUGcgGCGGCuuGGGCAGCaGCg -3'
miRNA:   3'- aaCGACaaCGCCGcgCUCGUCGgCGg -5'
1581 3' -60.4 NC_001347.2 + 109474 0.67 0.709195
Target:  5'- -gGCg---GCGGCGCcauGGCGGgCGCCu -3'
miRNA:   3'- aaCGacaaCGCCGCGc--UCGUCgGCGG- -5'
1581 3' -60.4 NC_001347.2 + 105938 0.73 0.367958
Target:  5'- cUGCUGaUGCGGCuggaccGCGAGCgcagcgucggcgAGCCGCg -3'
miRNA:   3'- aACGACaACGCCG------CGCUCG------------UCGGCGg -5'
1581 3' -60.4 NC_001347.2 + 100871 0.71 0.468775
Target:  5'- -aGCcGagGCGGCGCGGcGCAG-CGCCg -3'
miRNA:   3'- aaCGaCaaCGCCGCGCU-CGUCgGCGG- -5'
1581 3' -60.4 NC_001347.2 + 99999 0.7 0.543244
Target:  5'- -cGCgGgcGCGGuCGCGAuGCAGCUgaGCCa -3'
miRNA:   3'- aaCGaCaaCGCC-GCGCU-CGUCGG--CGG- -5'
1581 3' -60.4 NC_001347.2 + 89041 0.67 0.734903
Target:  5'- -aGCUGUcG-GGCGCGuuGCaacucuugcugcacGGCCGCCc -3'
miRNA:   3'- aaCGACAaCgCCGCGCu-CG--------------UCGGCGG- -5'
1581 3' -60.4 NC_001347.2 + 88633 0.68 0.670344
Target:  5'- cUGCacc-GCGGCuuGAGCGGCgGCCu -3'
miRNA:   3'- aACGacaaCGCCGcgCUCGUCGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.