Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 88038 | 0.66 | 0.76549 |
Target: 5'- -cGCUGa-GCGGCuGCGGaauGCGGCCcggGCCc -3' miRNA: 3'- aaCGACaaCGCCG-CGCU---CGUCGG---CGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 87638 | 0.68 | 0.689858 |
Target: 5'- cUGCUGUUGCu-CGCcAGCGGCgCGCg -3' miRNA: 3'- aACGACAACGccGCGcUCGUCG-GCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 85966 | 0.68 | 0.670344 |
Target: 5'- -cGCgaacccgUGUaGUGCGAGCcGCCGCCa -3' miRNA: 3'- aaCGaca----ACGcCGCGCUCGuCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 77862 | 0.67 | 0.699553 |
Target: 5'- cUGCUGcagGUGGC-CGAGCgccuGGgCGCCg -3' miRNA: 3'- aACGACaa-CGCCGcGCUCG----UCgGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 77761 | 0.66 | 0.792269 |
Target: 5'- -aGCgag-GCGGC-CGAGCGGgCGCa -3' miRNA: 3'- aaCGacaaCGCCGcGCUCGUCgGCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 77451 | 0.68 | 0.650714 |
Target: 5'- gUGCg--UGCuGCGCaAGCAGCUGCUc -3' miRNA: 3'- aACGacaACGcCGCGcUCGUCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 76164 | 0.7 | 0.524203 |
Target: 5'- -aGggGUUGCGGauggaGCuGGGCGGCCGCa -3' miRNA: 3'- aaCgaCAACGCCg----CG-CUCGUCGGCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 75841 | 0.67 | 0.699553 |
Target: 5'- -aGUUGUUGUGGCaaCGAcGuCGGCCGCg -3' miRNA: 3'- aaCGACAACGCCGc-GCU-C-GUCGGCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 67624 | 0.67 | 0.718776 |
Target: 5'- -cGCUucagacGUguccaGCGGCaGCGAcauGCGGCCGCUg -3' miRNA: 3'- aaCGA------CAa----CGCCG-CGCU---CGUCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 63102 | 0.66 | 0.783465 |
Target: 5'- gUGCcGccGUGGcCGCc-GCGGCCGCCg -3' miRNA: 3'- aACGaCaaCGCC-GCGcuCGUCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 62764 | 0.68 | 0.689858 |
Target: 5'- -aGCg---GCGGC-CGAccccgccguuGCGGCCGCCg -3' miRNA: 3'- aaCGacaaCGCCGcGCU----------CGUCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 59110 | 0.7 | 0.552851 |
Target: 5'- cUGCUGagcUGCGGCcaucaGAGCAGCgGCg -3' miRNA: 3'- aACGACa--ACGCCGcg---CUCGUCGgCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 47077 | 0.67 | 0.699553 |
Target: 5'- -aGCUGcgGCGGCGa-AGaCAGCUGCg -3' miRNA: 3'- aaCGACaaCGCCGCgcUC-GUCGGCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 39681 | 0.67 | 0.699553 |
Target: 5'- -aGCgacgUGCacGGCGCGuGCuggcGCCGCCu -3' miRNA: 3'- aaCGaca-ACG--CCGCGCuCGu---CGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 37983 | 0.68 | 0.680119 |
Target: 5'- cUGCUc--GCGGUccagcucggGC-AGCAGCCGCCg -3' miRNA: 3'- aACGAcaaCGCCG---------CGcUCGUCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 37947 | 0.67 | 0.728289 |
Target: 5'- gUGCaGgUGCaGCGCGucccagcGCGGCCGCUc -3' miRNA: 3'- aACGaCaACGcCGCGCu------CGUCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 25903 | 0.66 | 0.774537 |
Target: 5'- -cGCUGgaaCGcGCGCuuuuGGCGGCCGUCa -3' miRNA: 3'- aaCGACaacGC-CGCGc---UCGUCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 17331 | 0.7 | 0.524203 |
Target: 5'- -cGCgGUUGCcGCGCGuauGGCCGCCg -3' miRNA: 3'- aaCGaCAACGcCGCGCucgUCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 12317 | 0.68 | 0.639891 |
Target: 5'- -gGCUGUUGCacugcgaGGCcaucuacgGCGAGCAaaugcgcacGCCGCUg -3' miRNA: 3'- aaCGACAACG-------CCG--------CGCUCGU---------CGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 8356 | 0.69 | 0.621185 |
Target: 5'- gUGC-GUUuCGGCGcCGuGCAGuuGCCg -3' miRNA: 3'- aACGaCAAcGCCGC-GCuCGUCggCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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