Results 41 - 60 of 64 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 63102 | 0.66 | 0.783465 |
Target: 5'- gUGCcGccGUGGcCGCc-GCGGCCGCCg -3' miRNA: 3'- aACGaCaaCGCC-GCGcuCGUCGGCGG- -5' |
|||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 128444 | 0.66 | 0.779909 |
Target: 5'- cUGCUGcguggccgucaaGCGGCGCGA-CGGCgCGCg -3' miRNA: 3'- aACGACaa----------CGCCGCGCUcGUCG-GCGg -5' |
|||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 173956 | 0.66 | 0.792269 |
Target: 5'- -aGCaaaagUGCGGCuaGAGCgcgGGCCGCg -3' miRNA: 3'- aaCGaca--ACGCCGcgCUCG---UCGGCGg -5' |
|||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 77761 | 0.66 | 0.792269 |
Target: 5'- -aGCgag-GCGGC-CGAGCGGgCGCa -3' miRNA: 3'- aaCGacaaCGCCGcGCUCGUCgGCGg -5' |
|||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 173420 | 0.66 | 0.800938 |
Target: 5'- -cGCUGUUGUa-CGUGGcCAGCCGCa -3' miRNA: 3'- aaCGACAACGccGCGCUcGUCGGCGg -5' |
|||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 180033 | 0.67 | 0.736785 |
Target: 5'- -cGUUGUugagcauauguacUGUGGCgGCGGGCAGCauCGCg -3' miRNA: 3'- aaCGACA-------------ACGCCG-CGCUCGUCG--GCGg -5' |
|||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 89041 | 0.67 | 0.734903 |
Target: 5'- -aGCUGUcG-GGCGCGuuGCaacucuugcugcacGGCCGCCc -3' miRNA: 3'- aaCGACAaCgCCGCGCu-CG--------------UCGGCGG- -5' |
|||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 47077 | 0.67 | 0.699553 |
Target: 5'- -aGCUGcgGCGGCGa-AGaCAGCUGCg -3' miRNA: 3'- aaCGACaaCGCCGCgcUC-GUCGGCGg -5' |
|||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 77862 | 0.67 | 0.699553 |
Target: 5'- cUGCUGcagGUGGC-CGAGCgccuGGgCGCCg -3' miRNA: 3'- aACGACaa-CGCCGcGCUCG----UCgGCGG- -5' |
|||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 75841 | 0.67 | 0.699553 |
Target: 5'- -aGUUGUUGUGGCaaCGAcGuCGGCCGCg -3' miRNA: 3'- aaCGACAACGCCGc-GCU-C-GUCGGCGg -5' |
|||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 209056 | 0.67 | 0.699553 |
Target: 5'- -cGCgGUUGCGGuCGCGcacCGGCUGCa -3' miRNA: 3'- aaCGaCAACGCC-GCGCuc-GUCGGCGg -5' |
|||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 109474 | 0.67 | 0.709195 |
Target: 5'- -gGCg---GCGGCGCcauGGCGGgCGCCu -3' miRNA: 3'- aaCGacaaCGCCGCGc--UCGUCgGCGG- -5' |
|||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 152231 | 0.67 | 0.709195 |
Target: 5'- gUGCUGccGCGGCGCuuGCacuuggAGCCGgCu -3' miRNA: 3'- aACGACaaCGCCGCGcuCG------UCGGCgG- -5' |
|||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 153367 | 0.67 | 0.709195 |
Target: 5'- -aGCgucGUUcgcGCGGCGUGcGCAcGCCGCUc -3' miRNA: 3'- aaCGa--CAA---CGCCGCGCuCGU-CGGCGG- -5' |
|||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 2322 | 0.67 | 0.709195 |
Target: 5'- -cGCUG--GCGGCG-GAGCuGUCGCa -3' miRNA: 3'- aaCGACaaCGCCGCgCUCGuCGGCGg -5' |
|||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 157589 | 0.67 | 0.709195 |
Target: 5'- cUGCUGcgccgucUGCGGCucuacccgccCGAGCGGCUGCa -3' miRNA: 3'- aACGACa------ACGCCGc---------GCUCGUCGGCGg -5' |
|||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 67624 | 0.67 | 0.718776 |
Target: 5'- -cGCUucagacGUguccaGCGGCaGCGAcauGCGGCCGCUg -3' miRNA: 3'- aaCGA------CAa----CGCCG-CGCU---CGUCGGCGG- -5' |
|||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 157200 | 0.67 | 0.718776 |
Target: 5'- -aGCUGgugaucggccGCGGUGCGcuGCAGCCGg- -3' miRNA: 3'- aaCGACaa--------CGCCGCGCu-CGUCGGCgg -5' |
|||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 154814 | 0.67 | 0.728289 |
Target: 5'- gUGUcgaUGgccaGCGGCGCGcaCAGUCGCCg -3' miRNA: 3'- aACG---ACaa--CGCCGCGCucGUCGGCGG- -5' |
|||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 37947 | 0.67 | 0.728289 |
Target: 5'- gUGCaGgUGCaGCGCGucccagcGCGGCCGCUc -3' miRNA: 3'- aACGaCaACGcCGCGCu------CGUCGGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home