Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1581 | 3' | -60.4 | NC_001347.2 | + | 157589 | 0.67 | 0.709195 |
Target: 5'- cUGCUGcgccgucUGCGGCucuacccgccCGAGCGGCUGCa -3' miRNA: 3'- aACGACa------ACGCCGc---------GCUCGUCGGCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 67624 | 0.67 | 0.718776 |
Target: 5'- -cGCUucagacGUguccaGCGGCaGCGAcauGCGGCCGCUg -3' miRNA: 3'- aaCGA------CAa----CGCCG-CGCU---CGUCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 162341 | 0.66 | 0.76549 |
Target: 5'- gUUGaCUGcUGCGGUaGCGuGCAaaGUCGCCc -3' miRNA: 3'- -AAC-GACaACGCCG-CGCuCGU--CGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 25903 | 0.66 | 0.774537 |
Target: 5'- -cGCUGgaaCGcGCGCuuuuGGCGGCCGUCa -3' miRNA: 3'- aaCGACaacGC-CGCGc---UCGUCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 88038 | 0.66 | 0.76549 |
Target: 5'- -cGCUGa-GCGGCuGCGGaauGCGGCCcggGCCc -3' miRNA: 3'- aaCGACaaCGCCG-CGCU---CGUCGG---CGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 63102 | 0.66 | 0.783465 |
Target: 5'- gUGCcGccGUGGcCGCc-GCGGCCGCCg -3' miRNA: 3'- aACGaCaaCGCC-GCGcuCGUCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 128444 | 0.66 | 0.779909 |
Target: 5'- cUGCUGcguggccgucaaGCGGCGCGA-CGGCgCGCg -3' miRNA: 3'- aACGACaa----------CGCCGCGCUcGUCG-GCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 173956 | 0.66 | 0.792269 |
Target: 5'- -aGCaaaagUGCGGCuaGAGCgcgGGCCGCg -3' miRNA: 3'- aaCGaca--ACGCCGcgCUCG---UCGGCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 77761 | 0.66 | 0.792269 |
Target: 5'- -aGCgag-GCGGC-CGAGCGGgCGCa -3' miRNA: 3'- aaCGacaaCGCCGcGCUCGUCgGCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 173420 | 0.66 | 0.800938 |
Target: 5'- -cGCUGUUGUa-CGUGGcCAGCCGCa -3' miRNA: 3'- aaCGACAACGccGCGCUcGUCGGCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 159465 | 0.66 | 0.76458 |
Target: 5'- -cGCUcgaugacGaUGuCGGCGCG-GCGGCUGCUg -3' miRNA: 3'- aaCGA-------CaAC-GCCGCGCuCGUCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 157829 | 0.66 | 0.756334 |
Target: 5'- -cGCaGUUGCGGgGCcucaucGCAGCCuugcGCCg -3' miRNA: 3'- aaCGaCAACGCCgCGcu----CGUCGG----CGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 157200 | 0.67 | 0.718776 |
Target: 5'- -aGCUGgugaucggccGCGGUGCGcuGCAGCCGg- -3' miRNA: 3'- aaCGACaa--------CGCCGCGCu-CGUCGGCgg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 154814 | 0.67 | 0.728289 |
Target: 5'- gUGUcgaUGgccaGCGGCGCGcaCAGUCGCCg -3' miRNA: 3'- aACG---ACaa--CGCCGCGCucGUCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 37947 | 0.67 | 0.728289 |
Target: 5'- gUGCaGgUGCaGCGCGucccagcGCGGCCGCUc -3' miRNA: 3'- aACGaCaACGcCGCGCu------CGUCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 89041 | 0.67 | 0.734903 |
Target: 5'- -aGCUGUcG-GGCGCGuuGCaacucuugcugcacGGCCGCCc -3' miRNA: 3'- aaCGACAaCgCCGCGCu-CG--------------UCGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 180033 | 0.67 | 0.736785 |
Target: 5'- -cGUUGUugagcauauguacUGUGGCgGCGGGCAGCauCGCg -3' miRNA: 3'- aaCGACA-------------ACGCCG-CGCUCGUCG--GCGg -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 1901 | 0.67 | 0.737725 |
Target: 5'- gUGCUGcggcugGCuGGCGCuGGGCGcgguGCUGCCc -3' miRNA: 3'- aACGACaa----CG-CCGCG-CUCGU----CGGCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 168516 | 0.66 | 0.762755 |
Target: 5'- -aGCUGUUcgugcaacugcucgGCGGCguacaGCGGGUcGCgCGCCg -3' miRNA: 3'- aaCGACAA--------------CGCCG-----CGCUCGuCG-GCGG- -5' |
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1581 | 3' | -60.4 | NC_001347.2 | + | 158669 | 0.66 | 0.756334 |
Target: 5'- -cGCUGUgucGgGGCGCGcGCugguuaaacAGaCCGCCu -3' miRNA: 3'- aaCGACAa--CgCCGCGCuCG---------UC-GGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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