miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1581 5' -54.7 NC_001347.2 + 157274 0.66 0.965563
Target:  5'- gCGGcGCAgacgucggcGGUcCUcCAGCAGCAGCUg- -3'
miRNA:   3'- -GCC-CGU---------UCAcGAaGUCGUCGUCGAag -5'
1581 5' -54.7 NC_001347.2 + 164741 0.66 0.95865
Target:  5'- aGGcGCuGGUGUUggcaggcaaCGGCGGCAGCgUCa -3'
miRNA:   3'- gCC-CGuUCACGAa--------GUCGUCGUCGaAG- -5'
1581 5' -54.7 NC_001347.2 + 140574 0.66 0.95865
Target:  5'- cCGGGCGgcGGUGCUggCGGgGGUGGUg-- -3'
miRNA:   3'- -GCCCGU--UCACGAa-GUCgUCGUCGaag -5'
1581 5' -54.7 NC_001347.2 + 171576 0.66 0.950426
Target:  5'- -uGGCGAGUGUgaCAugccgguGCAGCGGCUg- -3'
miRNA:   3'- gcCCGUUCACGaaGU-------CGUCGUCGAag -5'
1581 5' -54.7 NC_001347.2 + 157685 0.67 0.946589
Target:  5'- uCGGGguGGacCUUCGGCuGCccguGCUUCa -3'
miRNA:   3'- -GCCCguUCacGAAGUCGuCGu---CGAAG- -5'
1581 5' -54.7 NC_001347.2 + 22280 0.67 0.946589
Target:  5'- aCGGGCucGUGU---GGCAGCuGGCUUg -3'
miRNA:   3'- -GCCCGuuCACGaagUCGUCG-UCGAAg -5'
1581 5' -54.7 NC_001347.2 + 228904 0.67 0.927208
Target:  5'- gCGGGCcuGUGCgcaagCAGCGuagucuGCGGCgUCg -3'
miRNA:   3'- -GCCCGuuCACGaa---GUCGU------CGUCGaAG- -5'
1581 5' -54.7 NC_001347.2 + 66907 0.67 0.927208
Target:  5'- aGGaGCAgcuGGUGUUUCGauuGCGGCGGCa-- -3'
miRNA:   3'- gCC-CGU---UCACGAAGU---CGUCGUCGaag -5'
1581 5' -54.7 NC_001347.2 + 1921 0.68 0.921763
Target:  5'- uGGGCGcGGUGCUgccCGcGCGGUGGCUg- -3'
miRNA:   3'- gCCCGU-UCACGAa--GU-CGUCGUCGAag -5'
1581 5' -54.7 NC_001347.2 + 87178 0.68 0.921205
Target:  5'- gCGGGUcgcagauGAGcaGCUUCuGCAGCGGCa-- -3'
miRNA:   3'- -GCCCG-------UUCa-CGAAGuCGUCGUCGaag -5'
1581 5' -54.7 NC_001347.2 + 173527 0.68 0.903989
Target:  5'- aGcGGCAAGUcGCguggCGGCGGCGGUg-- -3'
miRNA:   3'- gC-CCGUUCA-CGaa--GUCGUCGUCGaag -5'
1581 5' -54.7 NC_001347.2 + 159804 0.69 0.869709
Target:  5'- uGGGCuuguagccagcAGUGCUcCAGCGGC-GUUUCg -3'
miRNA:   3'- gCCCGu----------UCACGAaGUCGUCGuCGAAG- -5'
1581 5' -54.7 NC_001347.2 + 144636 0.69 0.862189
Target:  5'- uGGGCAGGacgGCgaCGGCAGCgagaacGGCUUa -3'
miRNA:   3'- gCCCGUUCa--CGaaGUCGUCG------UCGAAg -5'
1581 5' -54.7 NC_001347.2 + 1002 0.7 0.846529
Target:  5'- gCGGGCAcuGGUGCgaguGCuGCGGCUa- -3'
miRNA:   3'- -GCCCGU--UCACGaaguCGuCGUCGAag -5'
1581 5' -54.7 NC_001347.2 + 158734 0.7 0.846529
Target:  5'- aGGcGCGcGGcGgUUUAGCAGCGGCUUCc -3'
miRNA:   3'- gCC-CGU-UCaCgAAGUCGUCGUCGAAG- -5'
1581 5' -54.7 NC_001347.2 + 82714 0.7 0.830085
Target:  5'- aCGGGUGguggcGGUGgUgCAGCGGCGGCUg- -3'
miRNA:   3'- -GCCCGU-----UCACgAaGUCGUCGUCGAag -5'
1581 5' -54.7 NC_001347.2 + 156784 0.71 0.767253
Target:  5'- gCGGGagaAGGgaagGCggCAGCGGCAGCggCg -3'
miRNA:   3'- -GCCCg--UUCa---CGaaGUCGUCGUCGaaG- -5'
1581 5' -54.7 NC_001347.2 + 8349 0.71 0.757721
Target:  5'- aGGGUAGGUGCguuUCGGCGccguGCAGUUg- -3'
miRNA:   3'- gCCCGUUCACGa--AGUCGU----CGUCGAag -5'
1581 5' -54.7 NC_001347.2 + 111983 0.72 0.746136
Target:  5'- gCGGGCucuGGgaagcugcggcgGCUUgGGCAGCAGCggCg -3'
miRNA:   3'- -GCCCGu--UCa-----------CGAAgUCGUCGUCGaaG- -5'
1581 5' -54.7 NC_001347.2 + 125623 0.72 0.698508
Target:  5'- aGcGGCAGcaGCUUCAGCAGguGgUUCa -3'
miRNA:   3'- gC-CCGUUcaCGAAGUCGUCguCgAAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.