Results 21 - 24 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1581 | 5' | -54.7 | NC_001347.2 | + | 171576 | 0.66 | 0.950426 |
Target: 5'- -uGGCGAGUGUgaCAugccgguGCAGCGGCUg- -3' miRNA: 3'- gcCCGUUCACGaaGU-------CGUCGUCGAag -5' |
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1581 | 5' | -54.7 | NC_001347.2 | + | 140574 | 0.66 | 0.95865 |
Target: 5'- cCGGGCGgcGGUGCUggCGGgGGUGGUg-- -3' miRNA: 3'- -GCCCGU--UCACGAa-GUCgUCGUCGaag -5' |
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1581 | 5' | -54.7 | NC_001347.2 | + | 164741 | 0.66 | 0.95865 |
Target: 5'- aGGcGCuGGUGUUggcaggcaaCGGCGGCAGCgUCa -3' miRNA: 3'- gCC-CGuUCACGAa--------GUCGUCGUCGaAG- -5' |
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1581 | 5' | -54.7 | NC_001347.2 | + | 157274 | 0.66 | 0.965563 |
Target: 5'- gCGGcGCAgacgucggcGGUcCUcCAGCAGCAGCUg- -3' miRNA: 3'- -GCC-CGU---------UCAcGAaGUCGUCGUCGAag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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