Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1581 | 5' | -54.7 | NC_001347.2 | + | 228904 | 0.67 | 0.927208 |
Target: 5'- gCGGGCcuGUGCgcaagCAGCGuagucuGCGGCgUCg -3' miRNA: 3'- -GCCCGuuCACGaa---GUCGU------CGUCGaAG- -5' |
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1581 | 5' | -54.7 | NC_001347.2 | + | 185153 | 1.1 | 0.003804 |
Target: 5'- aCGGGCAAGUGCUUCAGCAGCAGCUUCu -3' miRNA: 3'- -GCCCGUUCACGAAGUCGUCGUCGAAG- -5' |
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1581 | 5' | -54.7 | NC_001347.2 | + | 173527 | 0.68 | 0.903989 |
Target: 5'- aGcGGCAAGUcGCguggCGGCGGCGGUg-- -3' miRNA: 3'- gC-CCGUUCA-CGaa--GUCGUCGUCGaag -5' |
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1581 | 5' | -54.7 | NC_001347.2 | + | 171576 | 0.66 | 0.950426 |
Target: 5'- -uGGCGAGUGUgaCAugccgguGCAGCGGCUg- -3' miRNA: 3'- gcCCGUUCACGaaGU-------CGUCGUCGAag -5' |
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1581 | 5' | -54.7 | NC_001347.2 | + | 164741 | 0.66 | 0.95865 |
Target: 5'- aGGcGCuGGUGUUggcaggcaaCGGCGGCAGCgUCa -3' miRNA: 3'- gCC-CGuUCACGAa--------GUCGUCGUCGaAG- -5' |
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1581 | 5' | -54.7 | NC_001347.2 | + | 159804 | 0.69 | 0.869709 |
Target: 5'- uGGGCuuguagccagcAGUGCUcCAGCGGC-GUUUCg -3' miRNA: 3'- gCCCGu----------UCACGAaGUCGUCGuCGAAG- -5' |
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1581 | 5' | -54.7 | NC_001347.2 | + | 158734 | 0.7 | 0.846529 |
Target: 5'- aGGcGCGcGGcGgUUUAGCAGCGGCUUCc -3' miRNA: 3'- gCC-CGU-UCaCgAAGUCGUCGUCGAAG- -5' |
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1581 | 5' | -54.7 | NC_001347.2 | + | 157685 | 0.67 | 0.946589 |
Target: 5'- uCGGGguGGacCUUCGGCuGCccguGCUUCa -3' miRNA: 3'- -GCCCguUCacGAAGUCGuCGu---CGAAG- -5' |
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1581 | 5' | -54.7 | NC_001347.2 | + | 157274 | 0.66 | 0.965563 |
Target: 5'- gCGGcGCAgacgucggcGGUcCUcCAGCAGCAGCUg- -3' miRNA: 3'- -GCC-CGU---------UCAcGAaGUCGUCGUCGAag -5' |
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1581 | 5' | -54.7 | NC_001347.2 | + | 156784 | 0.71 | 0.767253 |
Target: 5'- gCGGGagaAGGgaagGCggCAGCGGCAGCggCg -3' miRNA: 3'- -GCCCg--UUCa---CGaaGUCGUCGUCGaaG- -5' |
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1581 | 5' | -54.7 | NC_001347.2 | + | 144636 | 0.69 | 0.862189 |
Target: 5'- uGGGCAGGacgGCgaCGGCAGCgagaacGGCUUa -3' miRNA: 3'- gCCCGUUCa--CGaaGUCGUCG------UCGAAg -5' |
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1581 | 5' | -54.7 | NC_001347.2 | + | 140574 | 0.66 | 0.95865 |
Target: 5'- cCGGGCGgcGGUGCUggCGGgGGUGGUg-- -3' miRNA: 3'- -GCCCGU--UCACGAa-GUCgUCGUCGaag -5' |
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1581 | 5' | -54.7 | NC_001347.2 | + | 138694 | 0.78 | 0.422289 |
Target: 5'- gCGGGCGGGUGCgUCGGCuAGCGGUc-- -3' miRNA: 3'- -GCCCGUUCACGaAGUCG-UCGUCGaag -5' |
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1581 | 5' | -54.7 | NC_001347.2 | + | 125623 | 0.72 | 0.698508 |
Target: 5'- aGcGGCAGcaGCUUCAGCAGguGgUUCa -3' miRNA: 3'- gC-CCGUUcaCGAAGUCGUCguCgAAG- -5' |
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1581 | 5' | -54.7 | NC_001347.2 | + | 111983 | 0.72 | 0.746136 |
Target: 5'- gCGGGCucuGGgaagcugcggcgGCUUgGGCAGCAGCggCg -3' miRNA: 3'- -GCCCGu--UCa-----------CGAAgUCGUCGUCGaaG- -5' |
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1581 | 5' | -54.7 | NC_001347.2 | + | 87178 | 0.68 | 0.921205 |
Target: 5'- gCGGGUcgcagauGAGcaGCUUCuGCAGCGGCa-- -3' miRNA: 3'- -GCCCG-------UUCa-CGAAGuCGUCGUCGaag -5' |
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1581 | 5' | -54.7 | NC_001347.2 | + | 82714 | 0.7 | 0.830085 |
Target: 5'- aCGGGUGguggcGGUGgUgCAGCGGCGGCUg- -3' miRNA: 3'- -GCCCGU-----UCACgAaGUCGUCGUCGAag -5' |
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1581 | 5' | -54.7 | NC_001347.2 | + | 66907 | 0.67 | 0.927208 |
Target: 5'- aGGaGCAgcuGGUGUUUCGauuGCGGCGGCa-- -3' miRNA: 3'- gCC-CGU---UCACGAAGU---CGUCGUCGaag -5' |
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1581 | 5' | -54.7 | NC_001347.2 | + | 22280 | 0.67 | 0.946589 |
Target: 5'- aCGGGCucGUGU---GGCAGCuGGCUUg -3' miRNA: 3'- -GCCCGuuCACGaagUCGUCG-UCGAAg -5' |
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1581 | 5' | -54.7 | NC_001347.2 | + | 20424 | 0.8 | 0.32462 |
Target: 5'- aGGGUAGGUGCgcc-GCAGCGGCUUUg -3' miRNA: 3'- gCCCGUUCACGaaguCGUCGUCGAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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