miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15817 3' -55.1 NC_004065.1 + 83039 0.66 0.969784
Target:  5'- aUCCAGGGGuaaCCCUCGucuuCGCAggcguccaugACGCGCu -3'
miRNA:   3'- gAGGUCCUUc--GGGAGU----GCGU----------UGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 141543 0.66 0.966775
Target:  5'- cCUCCgAGGAcgcGCUCUUcgGCGUcGCGCGCa -3'
miRNA:   3'- -GAGG-UCCUu--CGGGAG--UGCGuUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 35870 0.66 0.966775
Target:  5'- aUCCcgAGGAAGCCUUCGaaucccuguCGgGACAgACg -3'
miRNA:   3'- gAGG--UCCUUCGGGAGU---------GCgUUGUgUG- -5'
15817 3' -55.1 NC_004065.1 + 161210 0.66 0.966775
Target:  5'- aCUUCAGc-AGCucgaCCUCGCGCAGCGCccGCa -3'
miRNA:   3'- -GAGGUCcuUCG----GGAGUGCGUUGUG--UG- -5'
15817 3' -55.1 NC_004065.1 + 203512 0.66 0.966775
Target:  5'- -gCCGGcGggGUCCgUCGCGUGACAUg- -3'
miRNA:   3'- gaGGUC-CuuCGGG-AGUGCGUUGUGug -5'
15817 3' -55.1 NC_004065.1 + 132823 0.66 0.966775
Target:  5'- -cCCAGGcuGGCCUaCagGCGCAGCGCGa -3'
miRNA:   3'- gaGGUCCu-UCGGGaG--UGCGUUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 121079 0.66 0.964872
Target:  5'- -cCCAGGucgucggcguacuGCCgCagGCGCAGCGCGCu -3'
miRNA:   3'- gaGGUCCuu-----------CGG-GagUGCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 100881 0.66 0.963561
Target:  5'- -cCCAGGuAGUUCUCcucCGCcGCGCACu -3'
miRNA:   3'- gaGGUCCuUCGGGAGu--GCGuUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 71594 0.66 0.963561
Target:  5'- aUCCAGcuGuaCCUgUACGCGACGCACg -3'
miRNA:   3'- gAGGUCcuUcgGGA-GUGCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 198783 0.66 0.963561
Target:  5'- --aCGGGAucaGGgCCUCuuCGCAACACAg -3'
miRNA:   3'- gagGUCCU---UCgGGAGu-GCGUUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 140255 0.66 0.963561
Target:  5'- aUCCAGaaccuGGCCCUCAU-CAACGcCGCg -3'
miRNA:   3'- gAGGUCcu---UCGGGAGUGcGUUGU-GUG- -5'
15817 3' -55.1 NC_004065.1 + 158060 0.66 0.963561
Target:  5'- cCUCCGGGcuGCCCggcucCACcgGCGGCGuCGCc -3'
miRNA:   3'- -GAGGUCCuuCGGGa----GUG--CGUUGU-GUG- -5'
15817 3' -55.1 NC_004065.1 + 103238 0.66 0.960136
Target:  5'- -aCCAGGcAGCUgCUCGCGUccucuuCACACa -3'
miRNA:   3'- gaGGUCCuUCGG-GAGUGCGuu----GUGUG- -5'
15817 3' -55.1 NC_004065.1 + 123747 0.66 0.960136
Target:  5'- cCUCCGGuccAGCaCCUCgguGCGCcGCGCGCc -3'
miRNA:   3'- -GAGGUCcu-UCG-GGAG---UGCGuUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 82541 0.66 0.959782
Target:  5'- gUCCAGGGgcuggacGGCCaC-CAUGCGGC-CGCa -3'
miRNA:   3'- gAGGUCCU-------UCGG-GaGUGCGUUGuGUG- -5'
15817 3' -55.1 NC_004065.1 + 138711 0.66 0.956495
Target:  5'- aUCguGGAgcGGUCCUCAgGUucgugGACACGCc -3'
miRNA:   3'- gAGguCCU--UCGGGAGUgCG-----UUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 100127 0.66 0.956495
Target:  5'- -gCCAGGccccgaucaGGGUCCgccgcagCGCGCGGCACAg -3'
miRNA:   3'- gaGGUCC---------UUCGGGa------GUGCGUUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 135475 0.66 0.956495
Target:  5'- -cCCAGGAGGUCaccggCUCGCGCAGguuCGCc -3'
miRNA:   3'- gaGGUCCUUCGG-----GAGUGCGUUgu-GUG- -5'
15817 3' -55.1 NC_004065.1 + 20697 0.66 0.952635
Target:  5'- -aCCGGGcAGUCCcCA-GUAGCACACg -3'
miRNA:   3'- gaGGUCCuUCGGGaGUgCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 94997 0.66 0.952635
Target:  5'- uCUCCgaaaaAGcGGAGCCCuUCGCGCAGaaguCugACg -3'
miRNA:   3'- -GAGG-----UC-CUUCGGG-AGUGCGUU----GugUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.